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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:maftools.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings maftools_2.23.0.tar.gz
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/maftools.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘maftools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maftools’ version ‘2.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maftools’ can be installed ... WARNING
Found the following significant warnings:
  snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=]
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/maftools.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
  installed size is 10.6Mb
  sub-directories of 1Mb or more:
    extdata   6.2Mb
    libs      3.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Rhtslib’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.dnaCopy_plotter: no visible binding for global variable ‘contig’
.dnaCopy_plotter: no visible binding for global variable ‘Chromosome’
.dnaCopy_plotter: no visible global function definition for ‘par’
.dnaCopy_plotter: no visible global function definition for ‘abline’
.dnaCopy_plotter: no visible global function definition for ‘segments’
.dnaCopy_plotter: no visible global function definition for ‘axis’
.getAmpDelCounts: no visible binding for global variable
  ‘Variant_Classification’
.getdomains: no visible binding for global variable ‘HGNC’
.getdomains: no visible binding for global variable ‘refseq.ID’
.getdomains: no visible binding for global variable ‘protein.ID’
.getdomains: no visible global function definition for ‘.’
.getdomains: no visible binding for global variable ‘aa.length’
.mafSetKeys: no visible binding for global variable ‘Chromosome’
.mafSetKeys: no visible binding for global variable ‘Start_Position’
.mafSetKeys: no visible binding for global variable ‘End_Position’
.seg2arm: no visible binding for global variable ‘Chromosome’
.seg2arm: no visible binding for global variable ‘Start’
.seg2arm: no visible binding for global variable ‘End’
.seg2arm: no visible global function definition for ‘median’
.seg2arm: no visible binding for global variable ‘Segment_Mean’
.seg2arm: no visible global function definition for ‘.’
.seg2arm: no visible binding for global variable ‘name’
.seg2arm: no visible binding for global variable ‘cn’
.seg2arm: no visible binding for global variable ‘logR’
.seg2arm: no visible binding for global variable ‘chromosome’
.seg2arm: no visible binding for global variable ‘arm’
add_legend: no visible global function definition for ‘par’
add_legend: no visible global function definition for ‘legend’
add_oncoprint: no visible global function definition for ‘unit’
add_oncoprint: no visible binding for global variable ‘bg’
add_oncoprint2: no visible global function definition for ‘unit’
annovarToMaf: no visible binding for global variable ‘Hugo_Symbol’
annovarToMaf: no visible binding for global variable ‘Gene.refGene’
annovarToMaf: no visible binding for global variable ‘Func.refGene’
annovarToMaf: no visible binding for global variable
  ‘ExonicFunc.refGene’
annovarToMaf: no visible binding for global variable ‘AAChange.refGene’
annovarToMaf: no visible binding for global variable ‘ref_alt_len’
annovarToMaf: no visible binding for global variable ‘Ref’
annovarToMaf: no visible binding for global variable ‘Alt’
annovarToMaf: no visible binding for global variable ‘ref_alt_diff’
annovarToMaf: no visible binding for global variable ‘Variant_Type’
annovarToMaf: no visible binding for global variable ‘ref_alt’
annovarToMaf: no visible binding for global variable ‘ens_id’
annovarToMaf: no visible binding for global variable ‘hgnc_symbol’
annovarToMaf: no visible binding for global variable ‘Entrez_Gene_Id’
annovarToMaf: no visible binding for global variable ‘Entrez’
binconf : bc: no visible global function definition for ‘qf’
binconf : bc: no visible global function definition for ‘qnorm’
bubble_plot: no visible global function definition for ‘layout’
bubble_plot: no visible global function definition for ‘symbols’
bubble_plot: no visible global function definition for ‘axis’
bubble_plot: no visible global function definition for ‘abline’
bubble_plot: no visible global function definition for ‘mtext’
bubble_plot: no visible global function definition for ‘text’
bubble_plot: no visible global function definition for ‘par’
cancerhotspots: no visible global function definition for ‘browseURL’
cancerhotspotsAggr : <anonymous>: no visible global function definition
  for ‘.’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘A’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘G’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘C’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘Ins’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘Del’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘t_depth’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘VAF’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘End_Position’
cancerhotspotsAggr : <anonymous>: no visible binding for global
  variable ‘Start_Position’
cancerhotspotsAggr: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
clinicalEnrichment : pairwise.fisher.test : compare.levels: no visible
  global function definition for ‘fisher.test’
clinicalEnrichment : pairwise.fisher.test: no visible global function
  definition for ‘pairwise.table’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Gene’
clinicalEnrichment: no visible binding for global variable
  ‘AlteredSamples’
clinicalEnrichment: no visible binding for global variable
  ‘Hugo_Symbol’
clinicalEnrichment: no visible binding for global variable
  ‘MutatedSamples’
clinicalEnrichment : <anonymous> : <anonymous>: no visible global
  function definition for ‘fisher.test’
clinicalEnrichment : <anonymous> : <anonymous>: no visible binding for
  global variable ‘Group’
clinicalEnrichment : <anonymous> : <anonymous>: no visible binding for
  global variable ‘Genotype’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Hugo_Symbol’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Analysis’
clinicalEnrichment : <anonymous>: no visible global function definition
  for ‘.’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Var1’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Var2’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘value’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘fdr’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘cf’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Genotype’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘N’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘n_mutated_Feature’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘N.x’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘N.y’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Feature_1’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘Feature_2’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘n_mutated_Feature1’
clinicalEnrichment : <anonymous>: no visible binding for global
  variable ‘n_mutated_Feature2’
clinicalEnrichment: no visible binding for global variable ‘Analysis’
clinicalEnrichment: no visible global function definition for ‘.’
clinicalEnrichment: no visible binding for global variable ‘Feature_1’
clinicalEnrichment: no visible binding for global variable ‘Feature_2’
clinicalEnrichment: no visible binding for global variable
  ‘n_mutated_Feature1’
clinicalEnrichment: no visible binding for global variable
  ‘n_mutated_Feature2’
clinicalEnrichment: no visible binding for global variable ‘fdr’
clinicalEnrichment: no visible binding for global variable ‘Group1’
clinicalEnrichment: no visible binding for global variable ‘Group2’
clinicalEnrichment: no visible binding for global variable
  ‘n_mutated_group1’
clinicalEnrichment: no visible binding for global variable
  ‘n_mutated_group2’
clinicalEnrichment: no visible binding for global variable ‘p_value’
clinicalEnrichment: no visible binding for global variable ‘OR’
clinicalEnrichment: no visible binding for global variable ‘OR_low’
clinicalEnrichment: no visible binding for global variable ‘OR_high’
clinicalEnrichment: no visible global function definition for
  ‘p.adjust’
clinicalEnrichment: no visible binding for global variable ‘cf’
cluster_prot: no visible binding for global variable ‘N’
cluster_prot: no visible binding for global variable ‘distance’
cluster_prot: no visible binding for global variable ‘startDist’
cluster_prot: no visible binding for global variable ‘endDist’
cluster_prot: no visible binding for global variable ‘fraction’
cluster_prot : <anonymous>: no visible binding for global variable
  ‘fraction’
coBarplot: no visible binding for global variable ‘Hugo_Symbol’
coBarplot: no visible binding for global variable ‘ID’
coBarplot: no visible global function definition for ‘.’
coBarplot: no visible binding for global variable ‘AlteredSamples’
coBarplot: no visible global function definition for ‘par’
coBarplot: no visible global function definition for ‘barplot’
coBarplot: no visible global function definition for ‘text’
coBarplot: no visible global function definition for ‘axis’
coBarplot: no visible global function definition for ‘mtext’
coBarplot: no visible global function definition for ‘title’
coBarplot: no visible global function definition for ‘legend’
coGisticChromPlot: no visible binding for global variable ‘Chromosome’
coGisticChromPlot: no visible binding for global variable ‘loc’
coGisticChromPlot: no visible binding for global variable
  ‘Start_Position’
coGisticChromPlot: no visible binding for global variable
  ‘End_Position’
coGisticChromPlot: no visible global function definition for ‘.’
coGisticChromPlot: no visible binding for global variable ‘qvalues’
coGisticChromPlot: no visible binding for global variable ‘Cytoband’
coGisticChromPlot: no visible binding for global variable
  ‘Variant_Classification’
coGisticChromPlot: no visible binding for global variable ‘value’
coGisticChromPlot: no visible global function definition for ‘layout’
coGisticChromPlot: no visible global function definition for ‘par’
coGisticChromPlot: no visible global function definition for ‘text’
coGisticChromPlot: no visible global function definition for ‘segments’
coGisticChromPlot: no visible global function definition for ‘axis’
coGisticChromPlot: no visible global function definition for ‘mtext’
coGisticChromPlot: no visible global function definition for ‘rect’
coGisticChromPlot: no visible global function definition for ‘lines’
coGisticChromPlot: no visible global function definition for ‘head’
coGisticChromPlot: no visible binding for global variable ‘gistic’
coGisticChromPlot: no visible binding for global variable
  ‘Start_Position_updated’
coGisticChromPlot: no visible binding for global variable
  ‘End_Position_updated’
coGisticChromPlot: no visible binding for global variable ‘ystart’
coGisticChromPlot: no visible global function definition for
  ‘complete.cases’
coGisticChromPlot: no visible global function definition for ‘rug’
coGisticChromPlot: no visible binding for global variable ‘Hugo_Symbol’
coGisticChromPlot: no visible binding for global variable ‘VC’
coGisticChromPlot: no visible binding for global variable ‘G_Score’
coGisticChromPlot: no visible binding for global variable
  ‘anno_Position’
coOncoplot: no visible binding for global variable ‘Hugo_Symbol’
coOncoplot: no visible global function definition for ‘.’
coOncoplot: no visible binding for global variable ‘MutatedSamples’
coOncoplot: no visible binding for global variable ‘MutatedSamples_m1’
coOncoplot: no visible binding for global variable ‘MutatedSamples_m2’
coOncoplot: no visible global function definition for ‘plot.new’
coOncoplot: no visible global function definition for ‘par’
coOncoplot: no visible global function definition for ‘image’
coOncoplot: no visible global function definition for ‘text’
coOncoplot: no visible global function definition for ‘legend’
createOncoMatrix: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
createOncoMatrix: no visible binding for global variable ‘Hugo_Symbol’
createOncoMatrix: no visible binding for global variable ‘Variant_Type’
createOncoMatrix: no visible binding for global variable
  ‘Variant_Classification’
createOncoMatrix: no visible binding for global variable
  ‘Variant_Classification_temp’
createOncoMatrix: no visible global function definition for ‘.’
dashboard: no visible binding for global variable ‘statFontSize’
dashboard: no visible binding for global variable ‘fs’
dashboard: no visible binding for global variable ‘pie’
dashboard: no visible global function definition for ‘par’
dashboard: no visible global function definition for ‘barplot’
dashboard: no visible global function definition for ‘abline’
dashboard: no visible global function definition for ‘axis’
dashboard: no visible global function definition for ‘title’
dashboard: no visible binding for global variable ‘value’
dashboard: no visible binding for global variable ‘variable’
dashboard: no visible global function definition for ‘text’
dashboard: no visible global function definition for ‘mtext’
dashboard: no visible binding for global variable ‘ID’
dashboard: no visible binding for global variable ‘Mean’
dashboard: no visible global function definition for ‘lines’
dashboard: no visible binding for global variable ‘Median’
dashboard: no visible binding for global variable ‘N’
dashboard: no visible global function definition for ‘.’
dashboard: no visible binding for global variable
  ‘Variant_Classification’
dashboard: no visible global function definition for ‘boxplot’
dashboard: no visible binding for global variable ‘boxStat’
dashboard: no visible binding for global variable ‘Hugo_Symbol’
dashboard: no visible binding for global variable ‘AlteredSamples’
detect_kataegis: no visible global function definition for
  ‘write.table’
detect_kataegis: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
detect_kataegis_chr: no visible binding for global variable ‘row_idx’
detect_kataegis_chr: no visible binding for global variable
  ‘Start_Position’
detect_kataegis_chr: no visible binding for global variable
  ‘Chromosome’
detect_kataegis_chr: no visible binding for global variable ‘Size’
detect_kataegis_chr: no visible binding for global variable
  ‘End_Position’
detect_kataegis_chr: no visible global function definition for ‘.’
detect_kataegis_chr: no visible binding for global variable ‘con.class’
detect_kataegis_chr: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
dirichletClusters: no visible binding for global variable ‘dp’
drugInteractions: no visible binding for global variable ‘Hugo_Symbol’
drugInteractions: no visible binding for global variable ‘Gene’
drugInteractions: no visible binding for global variable ‘N’
drugInteractions: no visible binding for global variable ‘category’
drugInteractions: no visible global function definition for ‘.’
drugInteractions: no visible binding for global variable ‘V1’
drugInteractions: no visible binding for global variable ‘label’
drugInteractions: no visible global function definition for ‘par’
drugInteractions: no visible global function definition for ‘pie’
drugInteractions: no visible global function definition for
  ‘heat.colors’
drugInteractions: no visible global function definition for ‘barplot’
drugInteractions: no visible global function definition for ‘text’
drugInteractions: no visible global function definition for ‘axis’
drugInteractions: no visible global function definition for ‘mtext’
drugInteractions: no visible global function definition for ‘title’
estimateSignatures: no visible global function definition for ‘png’
filterCopyNumber: no visible global function definition for ‘.’
filterCopyNumber: no visible binding for global variable ‘Hugo_Symbol’
filterCopyNumber: no visible binding for global variable ‘Chromosome’
filterCopyNumber: no visible binding for global variable
  ‘i.Start_Position’
filterCopyNumber: no visible binding for global variable
  ‘i.End_Position’
filterCopyNumber: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
filterCopyNumber: no visible binding for global variable ‘t_vaf’
filterCopyNumber: no visible binding for global variable
  ‘Start_Position’
filterCopyNumber: no visible binding for global variable ‘End_Position’
filterCopyNumber: no visible binding for global variable ‘Segment_Mean’
filterCopyNumber: no visible binding for global variable ‘CN’
filterMaf: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
filterMaf: no visible binding for global variable ‘Hugo_Symbol’
forestPlot: no visible binding for global variable ‘pval’
forestPlot: no visible binding for global variable ‘adjPval’
forestPlot: no visible binding for global variable ‘Cohort’
forestPlot: no visible binding for global variable ‘SampleSize’
forestPlot: no visible binding for global variable ‘pos’
forestPlot: no visible global function definition for ‘par’
forestPlot: no visible global function definition for ‘.’
forestPlot: no visible binding for global variable ‘or’
forestPlot: no visible binding for global variable ‘ci.up’
forestPlot: no visible binding for global variable ‘ci.low’
forestPlot: no visible binding for global variable ‘or_new’
forestPlot: no visible binding for global variable ‘upper’
forestPlot: no visible binding for global variable ‘lower’
forestPlot : <anonymous>: no visible global function definition for
  ‘points’
forestPlot : <anonymous>: no visible global function definition for
  ‘segments’
forestPlot: no visible global function definition for ‘abline’
forestPlot: no visible global function definition for ‘axis’
forestPlot: no visible global function definition for ‘mtext’
forestPlot: no visible global function definition for ‘title’
forestPlot: no visible global function definition for ‘text’
genesToBarcodes: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
genesToBarcodes : <anonymous>: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
genotypeMatrix: no visible binding for global variable ‘id’
genotypeMatrix: no visible binding for global variable ‘Chromosome’
genotypeMatrix: no visible binding for global variable ‘Start_Position’
genotypeMatrix: no visible binding for global variable ‘t_vaf’
get_anno_cols: no visible global function definition for
  ‘colorRampPalette’
get_col_df: no visible binding for global variable ‘Hugo_Symbol’
get_col_df: no visible binding for global variable ‘Var1’
get_col_df: no visible binding for global variable ‘Freq’
get_col_df: no visible global function definition for ‘.’
get_col_df: no visible binding for global variable ‘Gene’
get_lp_data: no visible binding for global variable ‘Hugo_Symbol’
get_lp_data: no visible global function definition for ‘.’
get_lp_data: no visible binding for global variable ‘Variant_Type’
get_lp_data: no visible binding for global variable
  ‘Variant_Classification’
get_lp_data: no visible binding for global variable ‘AAChange’
get_lp_data: no visible binding for global variable ‘HGNC’
get_lp_data: no visible binding for global variable ‘refseq.ID’
get_lp_data: no visible binding for global variable ‘protein.ID’
get_lp_data: no visible binding for global variable ‘aa.length’
get_lp_data: no visible binding for global variable ‘domain_lenght’
get_lp_data: no visible binding for global variable ‘End’
get_lp_data: no visible binding for global variable ‘Start’
get_lp_data: no visible binding for global variable ‘ID’
get_lp_data: no visible binding for global variable ‘MutatedSamples’
get_lp_data: no visible binding for global variable ‘conv’
get_lp_data: no visible binding for global variable ‘count2’
get_lp_data: no visible binding for global variable ‘count’
get_lp_data: no visible binding for global variable ‘posRounded’
get_lp_data: no visible binding for global variable ‘lab’
get_lp_data: no visible binding for global variable ‘Label’
get_pw_summary: no visible binding for global variable ‘Pathway’
get_pw_summary: no visible binding for global variable
  ‘fraction_affected’
get_pw_summary: no visible binding for global variable
  ‘n_affected_genes’
get_pw_summary: no visible binding for global variable ‘N’
get_pw_summary: no visible binding for global variable ‘ID’
get_pw_summary: no visible binding for global variable
  ‘Fraction_mutated_samples’
get_pw_summary: no visible binding for global variable
  ‘Mutated_samples’
get_pw_summary: no visible global function definition for ‘.’
get_threshold : <anonymous>: no visible global function definition for
  ‘dbinom’
gisticBubblePlot: no visible binding for global variable ‘qvalues’
gisticBubblePlot: no visible binding for global variable ‘Chromosome’
gisticBubblePlot: no visible binding for global variable ‘loc’
gisticBubblePlot: no visible binding for global variable
  ‘Start_Position’
gisticBubblePlot: no visible binding for global variable ‘End_Position’
gisticBubblePlot: no visible global function definition for ‘.’
gisticBubblePlot: no visible binding for global variable ‘Cytoband’
gisticBubblePlot: no visible binding for global variable
  ‘Variant_Classification’
gisticBubblePlot: no visible binding for global variable ‘nGenes’
gisticBubblePlot: no visible binding for global variable ‘log_q’
gisticBubblePlot: no visible global function definition for ‘par’
gisticChromPlot: no visible binding for global variable ‘qvalues’
gisticChromPlot: no visible binding for global variable ‘Chromosome’
gisticChromPlot: no visible binding for global variable ‘loc’
gisticChromPlot: no visible binding for global variable
  ‘Start_Position’
gisticChromPlot: no visible binding for global variable ‘End_Position’
gisticChromPlot: no visible global function definition for ‘.’
gisticChromPlot: no visible binding for global variable ‘Cytoband’
gisticChromPlot: no visible binding for global variable
  ‘Variant_Classification’
gisticChromPlot: no visible binding for global variable ‘amp’
gisticChromPlot: no visible global function definition for ‘layout’
gisticChromPlot: no visible global function definition for ‘par’
gisticChromPlot: no visible global function definition for ‘abline’
gisticChromPlot: no visible global function definition for ‘axis’
gisticChromPlot: no visible global function definition for ‘mtext’
gisticChromPlot: no visible global function definition for ‘segments’
gisticChromPlot: no visible global function definition for ‘rect’
gisticChromPlot: no visible global function definition for ‘text’
gisticChromPlot: no visible binding for global variable
  ‘Start_Position_updated’
gisticChromPlot: no visible binding for global variable
  ‘End_Position_updated’
gisticChromPlot: no visible global function definition for
  ‘complete.cases’
gisticChromPlot: no visible binding for global variable ‘Hugo_Symbol’
gisticChromPlot: no visible binding for global variable ‘G_Score’
gisticChromPlot: no visible binding for global variable ‘fdr’
gisticCompare: no visible binding for global variable ‘ID’
gisticCompare: no visible binding for global variable
  ‘Variant_Classification’
gisticCompare: no visible global function definition for ‘.’
gisticCompare: no visible binding for global variable ‘Cytoband’
gisticCompare: no visible binding for global variable ‘G1_wt’
gisticCompare: no visible binding for global variable ‘G1’
gisticCompare: no visible binding for global variable ‘G2_wt’
gisticCompare: no visible binding for global variable ‘G2’
gisticCompare : <anonymous>: no visible binding for global variable
  ‘G1’
gisticCompare : <anonymous>: no visible binding for global variable
  ‘G1_wt’
gisticCompare : <anonymous>: no visible binding for global variable
  ‘G2’
gisticCompare : <anonymous>: no visible binding for global variable
  ‘G2_wt’
gisticCompare : <anonymous>: no visible global function definition for
  ‘fisher.test’
gisticCompare: no visible binding for global variable ‘pval’
gisticCompare: no visible binding for global variable ‘adjPval’
gisticCompare: no visible global function definition for ‘p.adjust’
gisticMap: no visible binding for global variable ‘Cytoband’
gisticMap: no visible binding for global variable
  ‘Variant_Classification’
gisticOncoPlot: no visible global function definition for ‘par’
gisticOncoPlot: no visible global function definition for ‘image’
gisticOncoPlot: no visible global function definition for ‘abline’
gisticOncoPlot: no visible global function definition for ‘mtext’
gisticOncoPlot: no visible global function definition for ‘text’
gisticOncoPlot: no visible global function definition for ‘legend’
gtMarkers: no visible global function definition for ‘download.file’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘consequence_type’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘gene_affected’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘assembly_version’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘chromosome’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘chromosome_start’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘chromosome_end’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Variant_Classification’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Variant_Type’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘reference_genome_allele’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘mutated_from_allele’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘mutated_to_allele’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘icgc_sample_id’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘verification_status’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘sequencing_strategy’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘verification_platform’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘ens_id’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Hugo_Symbol’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘hgnc_symbol’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Entrez_Gene_Id’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Entrez’
icgcSimpleMutationToMAF: no visible global function definition for
  ‘write.table’
icgcSimpleMutationToMAF: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
inferHeterogeneity: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
inferHeterogeneity: no visible binding for global variable ‘t_vaf’
inferHeterogeneity: no visible binding for global variable
  ‘t_alt_count’
inferHeterogeneity: no visible binding for global variable
  ‘t_ref_count’
inferHeterogeneity: no visible binding for global variable ‘Chromosome’
inferHeterogeneity: no visible binding for global variable
  ‘Start_Position’
inferHeterogeneity: no visible binding for global variable
  ‘End_Position’
inferHeterogeneity: no visible binding for global variable ‘Sample’
inferHeterogeneity: no visible global function definition for ‘.’
inferHeterogeneity: no visible binding for global variable
  ‘Hugo_Symbol’
inferHeterogeneity: no visible global function definition for ‘median’
intersectMAF: no visible binding for global variable ‘Chromosome’
intersectMAF: no visible binding for global variable ‘Start_Position’
intersectMAF: no visible binding for global variable ‘End_Position’
intersectMAF: no visible global function definition for ‘.’
intersectMAF: no visible binding for global variable ‘Reference_Allele’
intersectMAF: no visible binding for global variable
  ‘Tumor_Seq_Allele2’
intersectMAF: no visible binding for global variable ‘variant_ID’
intersectMAF: no visible binding for global variable ‘maf_slot’
label_pos: no visible binding for global variable ‘labThis’
label_pos: no visible binding for global variable ‘pos2’
label_pos: no visible binding for global variable ‘count2’
label_pos: no visible binding for global variable ‘conv’
lollipopPlot: no visible binding for global variable ‘domain_lenght’
lollipopPlot: no visible binding for global variable ‘End’
lollipopPlot: no visible binding for global variable ‘Start’
lollipopPlot: no visible binding for global variable ‘Hugo_Symbol’
lollipopPlot: no visible global function definition for ‘.’
lollipopPlot: no visible binding for global variable ‘Variant_Type’
lollipopPlot: no visible binding for global variable
  ‘Variant_Classification’
lollipopPlot: no visible binding for global variable ‘AAChange_’
lollipopPlot: no visible binding for global variable ‘ID’
lollipopPlot: no visible binding for global variable ‘MutatedSamples’
lollipopPlot: no visible binding for global variable ‘conv’
lollipopPlot: no visible binding for global variable ‘count2’
lollipopPlot: no visible binding for global variable ‘count’
lollipopPlot: no visible binding for global variable ‘posRounded’
lollipopPlot: no visible binding for global variable ‘lab’
lollipopPlot: no visible binding for global variable ‘labThis’
lollipopPlot: no visible binding for global variable ‘pos2’
lollipopPlot: no visible binding for global variable ‘Label’
lollipopPlot: no visible global function definition for ‘par’
lollipopPlot: no visible global function definition for ‘rect’
lollipopPlot: no visible global function definition for ‘axis’
lollipopPlot: no visible global function definition for ‘segments’
lollipopPlot: no visible global function definition for ‘points’
lollipopPlot: no visible binding for global variable ‘domainCol’
lollipopPlot: no visible global function definition for ‘title’
lollipopPlot: no visible binding for global variable ‘refseq.ID’
lollipopPlot: no visible global function definition for ‘text’
lollipopPlot: no visible global function definition for ‘legend’
lollipopPlot2: no visible binding for global variable ‘Label’
lollipopPlot2: no visible binding for global variable
  ‘Variant_Classification’
lollipopPlot2: no visible global function definition for ‘par’
lollipopPlot2: no visible global function definition for ‘rect’
lollipopPlot2: no visible global function definition for ‘axis’
lollipopPlot2: no visible global function definition for ‘segments’
lollipopPlot2: no visible binding for global variable ‘pos2’
lollipopPlot2: no visible binding for global variable ‘count2’
lollipopPlot2: no visible global function definition for ‘points’
lollipopPlot2: no visible binding for global variable ‘domainCol’
lollipopPlot2: no visible binding for global variable ‘Start’
lollipopPlot2: no visible binding for global variable ‘End’
lollipopPlot2: no visible global function definition for ‘.’
lollipopPlot2: no visible global function definition for ‘text’
lollipopPlot2: no visible global function definition for ‘mtext’
lollipopPlot2: no visible binding for global variable ‘refseq.ID’
lollipopPlot2: no visible binding for global variable ‘conv’
lollipopPlot2: no visible global function definition for ‘legend’
mafCompare: no visible global function definition for ‘.’
mafCompare: no visible binding for global variable ‘Pathway’
mafCompare: no visible binding for global variable ‘Mutated_samples’
mafCompare: no visible binding for global variable ‘AlteredSamples’
mafCompare: no visible binding for global variable ‘Hugo_Symbol’
mafCompare: no visible binding for global variable ‘MutatedSamples’
mafCompare : <anonymous>: no visible global function definition for
  ‘fisher.test’
mafCompare: no visible binding for global variable ‘pval’
mafCompare: no visible binding for global variable ‘adjPval’
mafCompare: no visible global function definition for ‘p.adjust’
mafSurvGroup: no visible binding for global variable ‘Time’
mafSurvGroup: no visible global function definition for ‘.’
mafSurvGroup: no visible global function definition for ‘median’
mafSurvGroup: no visible binding for global variable ‘Group’
mafSurvGroup: no visible global function definition for ‘pchisq’
mafSurvGroup: no visible global function definition for ‘par’
mafSurvGroup: no visible global function definition for ‘abline’
mafSurvGroup: no visible global function definition for ‘points’
mafSurvGroup: no visible binding for global variable ‘survProb’
mafSurvGroup: no visible global function definition for ‘lines’
mafSurvGroup: no visible global function definition for ‘axis’
mafSurvGroup: no visible global function definition for ‘mtext’
mafSurvGroup: no visible global function definition for ‘legend’
mafSurvGroup: no visible global function definition for ‘title’
mafSurvival: no visible binding for global variable ‘Time’
mafSurvival: no visible global function definition for ‘.’
mafSurvival: no visible global function definition for ‘median’
mafSurvival: no visible binding for global variable ‘Group’
mafSurvival: no visible global function definition for ‘pchisq’
mafSurvival: no visible global function definition for ‘par’
mafSurvival: no visible global function definition for ‘abline’
mafSurvival: no visible global function definition for ‘points’
mafSurvival: no visible binding for global variable ‘survProb’
mafSurvival: no visible global function definition for ‘lines’
mafSurvival: no visible global function definition for ‘axis’
mafSurvival: no visible global function definition for ‘mtext’
mafSurvival: no visible global function definition for ‘legend’
mafSurvival: no visible global function definition for ‘title’
mafbarplot: no visible binding for global variable ‘ID’
mafbarplot: no visible global function definition for ‘.’
mafbarplot: no visible binding for global variable ‘Hugo_Symbol’
mafbarplot: no visible binding for global variable ‘AlteredSamples’
mafbarplot: no visible global function definition for ‘par’
mafbarplot: no visible global function definition for ‘barplot’
mafbarplot: no visible global function definition for ‘axis’
mafbarplot: no visible global function definition for ‘text’
mafbarplot: no visible global function definition for ‘abline’
mafbarplot: no visible global function definition for ‘mtext’
mafbarplot: no visible global function definition for ‘legend’
mapMutsToSegs: no visible binding for global variable ‘Sample’
mapMutsToSegs: no visible binding for global variable ‘Chromosome’
mapMutsToSegs: no visible binding for global variable ‘Start_Position’
mapMutsToSegs: no visible binding for global variable ‘End_Position’
mapMutsToSegs: no visible binding for global variable ‘Variant_Type’
mapMutsToSegs: no visible global function definition for ‘.’
mapMutsToSegs: no visible binding for global variable ‘Hugo_Symbol’
mapMutsToSegs: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
mapMutsToSegs: no visible binding for global variable
  ‘i.Start_Position’
mapMutsToSegs: no visible binding for global variable ‘i.End_Position’
mapMutsToSegs: no visible binding for global variable ‘Segment_Mean’
mapMutsToSegs: no visible binding for global variable
  ‘Start_Position_updated’
mapMutsToSegs: no visible binding for global variable
  ‘End_Position_updated’
mapMutsToSegs: no visible binding for global variable ‘CN’
math.score: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
math.score: no visible binding for global variable ‘t_ref_count’
math.score: no visible binding for global variable ‘t_alt_count’
math.score: no visible binding for global variable ‘t_vaf’
math.score: no visible global function definition for ‘.’
math.score: no visible binding for global variable ‘Hugo_Symbol’
math.score : <anonymous>: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
math.score : <anonymous>: no visible global function definition for
  ‘median’
mutCountMatrix: no visible binding for global variable
  ‘Variant_Classification’
mutCountMatrix: no visible global function definition for ‘.’
mutCountMatrix: no visible binding for global variable ‘Hugo_Symbol’
mutCountMatrix: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
mutCountMatrix: no visible binding for global variable ‘tot’
oncodrive: no visible global function definition for ‘read.csv’
oncodrive: no visible global function definition for ‘sd’
oncodrive: no visible binding for global variable ‘Hugo_Symbol’
oncodrive: no visible global function definition for ‘pnorm’
oncodrive: no visible global function definition for ‘p.adjust’
oncodrive: no visible binding for global variable
  ‘fract_muts_in_clusters’
oncodrive: no visible binding for global variable ‘muts_in_clusters’
oncodrive: no visible binding for global variable ‘total’
oncodrive: no visible global function definition for ‘glm’
oncodrive: no visible global function definition for ‘poisson’
oncodrive : <anonymous>: no visible global function definition for
  ‘poisson.test’
oncodrive: no visible binding for global variable ‘poissonFdr’
oncodrive: no visible global function definition for ‘.’
oncodrive: no visible binding for global variable ‘tFdr’
oncodrive: no visible binding for global variable ‘fdr’
oncoplot: no visible global function definition for ‘.’
oncoplot: no visible binding for global variable ‘Pathway’
oncoplot: no visible binding for global variable ‘Gene’
oncoplot: no visible global function definition for ‘setNames’
oncoplot: no visible binding for global variable ‘AlteredSamples’
oncoplot: no visible binding for global variable ‘Hugo_Symbol’
oncoplot: no visible binding for global variable ‘MutatedSamples’
oncoplot: no visible binding for global variable ‘fractMutated’
oncoplot: no visible binding for global variable ‘mutload’
oncoplot: no visible binding for global variable ‘Tumor_Sample_Barcode’
oncoplot: no visible binding for global variable ‘total’
oncoplot: no visible binding for global variable
  ‘Variant_Classification_temp’
oncoplot: no visible binding for global variable
  ‘Variant_Classification’
oncoplot: no visible binding for global variable ‘value’
oncoplot: no visible binding for global variable ‘CNV_total’
oncoplot: no visible binding for global variable ‘Amp’
oncoplot: no visible binding for global variable ‘Del’
oncoplot: no visible binding for global variable ‘max_alt’
oncoplot: no visible binding for global variable ‘n’
oncoplot : <anonymous>: no visible binding for global variable
  ‘pct_alt’
oncoplot: no visible global function definition for ‘par’
oncoplot: no visible global function definition for ‘axis’
oncoplot: no visible global function definition for ‘rect’
oncoplot: no visible global function definition for ‘mtext’
oncoplot: no visible global function definition for ‘abline’
oncoplot: no visible global function definition for ‘title’
oncoplot: no visible global function definition for ‘image’
oncoplot: no visible global function definition for ‘write.table’
oncoplot: no visible binding for global variable ‘row_id’
oncoplot : <anonymous>: no visible global function definition for
  ‘rect’
oncoplot: no visible binding for global variable ‘temp_af’
oncoplot : <anonymous> : <anonymous>: no visible global function
  definition for ‘points’
oncoplot: no visible global function definition for ‘box’
oncoplot: no visible global function definition for ‘text’
oncoplot : <anonymous>: no visible global function definition for
  ‘colorRampPalette’
oncoplot: no visible global function definition for ‘plot.new’
oncoplot: no visible global function definition for ‘complete.cases’
oncoplot: no visible global function definition for ‘legend’
parse_prot: no visible global function definition for ‘.’
parse_prot: no visible binding for global variable ‘Hugo_Symbol’
parse_prot: no visible binding for global variable
  ‘Variant_Classification’
parse_prot: no visible binding for global variable ‘AAChange’
parse_prot: no visible binding for global variable ‘conv’
parse_prot: no visible binding for global variable ‘aa.length’
parse_prot: no visible binding for global variable ‘total’
parse_prot: no visible global function definition for ‘txtProgressBar’
parse_prot: no visible binding for global variable ‘th’
parse_prot: no visible global function definition for
  ‘setTxtProgressBar’
pathway_load: no visible binding for global variable ‘Gene’
pathway_load: no visible global function definition for ‘.’
pathway_load: no visible binding for global variable ‘Pathway’
pathway_load: no visible binding for global variable
  ‘fraction_affected’
pathway_load: no visible binding for global variable ‘n_affected_genes’
pathway_load: no visible binding for global variable ‘N’
pathway_load: no visible binding for global variable ‘ID’
pathway_load: no visible binding for global variable
  ‘Fraction_mutated_samples’
pathway_load: no visible binding for global variable ‘Mutated_samples’
pathways: no visible global function definition for ‘.’
pathways: no visible binding for global variable ‘Pathway’
pathways: no visible binding for global variable ‘Gene’
pathways: no visible binding for global variable ‘n_affected_genes’
pathways: no visible binding for global variable
  ‘Fraction_mutated_samples’
pathways : draw_rect: no visible global function definition for ‘rect’
pathways : draw_text: no visible global function definition for ‘text’
pathways : draw_text_sub: no visible global function definition for
  ‘text’
pathways: no visible binding for global variable ‘ID’
pathways: no visible global function definition for ‘layout’
pathways: no visible global function definition for ‘par’
pathways: no visible global function definition for ‘text’
pathways: no visible global function definition for ‘title’
pathways: no visible global function definition for ‘rect’
pathways: no visible global function definition for ‘axis’
pfamDomains: no visible binding for global variable ‘Variant_Type’
pfamDomains: no visible global function definition for ‘.’
pfamDomains: no visible binding for global variable ‘Hugo_Symbol’
pfamDomains: no visible binding for global variable
  ‘Variant_Classification’
pfamDomains: no visible binding for global variable ‘AAChange’
pfamDomains: no visible binding for global variable ‘conv’
pfamDomains: no visible binding for global variable ‘total’
pfamDomains: no visible binding for global variable ‘N’
pfamDomains: no visible binding for global variable ‘fraction’
pfamDomains: no visible binding for global variable ‘HGNC’
pfamDomains: no visible binding for global variable ‘Start’
pfamDomains: no visible binding for global variable ‘End’
pfamDomains: no visible binding for global variable ‘Label’
pfamDomains: no visible binding for global variable ‘pfam’
pfamDomains: no visible binding for global variable ‘Description’
pfamDomains: no visible binding for global variable ‘idx’
pfamDomains: no visible binding for global variable ‘DomainLabel’
pfamDomains: no visible binding for global variable ‘nMut’
pfamDomains: no visible binding for global variable ‘nGenes’
pfamDomains: no visible global function definition for ‘complete.cases’
pfamDomains: no visible binding for global variable ‘nMuts’
pfamDomains: no visible global function definition for ‘write.table’
pfamDomains: no visible global function definition for ‘par’
pfamDomains: no visible global function definition for ‘mtext’
plotApobecDiff: no visible binding for global variable
  ‘APOBEC_Enriched’
plotApobecDiff: no visible binding for global variable
  ‘fraction_APOBEC_mutations’
plotApobecDiff: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
plotApobecDiff: no visible binding for global variable ‘ID’
plotApobecDiff: no visible global function definition for ‘.’
plotApobecDiff: no visible binding for global variable ‘Mean’
plotApobecDiff: no visible binding for global variable ‘Median’
plotApobecDiff: no visible binding for global variable ‘Cohort’
plotApobecDiff: no visible binding for global variable ‘pval’
plotApobecDiff: no visible binding for global variable ‘Hugo_Symbol’
plotApobecDiff: no visible binding for global variable ‘MutatedSamples’
plotApobecDiff: no visible binding for global variable ‘SampleSize’
plotApobecDiff: no visible binding for global variable ‘nonApobec’
plotApobecDiff: no visible binding for global variable ‘V1’
plotApobecDiff: no visible binding for global variable ‘title’
plotApobecDiff: no visible binding for global variable ‘variable’
plotApobecDiff: no visible binding for global variable ‘value’
plotApobecDiff: no visible global function definition for ‘par’
plotApobecDiff: no visible binding for global variable ‘n_mutations’
plotApobecDiff: no visible global function definition for ‘boxplot’
plotApobecDiff: no visible global function definition for ‘title’
plotApobecDiff: no visible global function definition for ‘axis’
plotApobecDiff: no visible global function definition for ‘na.omit’
plotApobecDiff: no visible binding for global variable ‘N’
plotApobecDiff: no visible global function definition for ‘mtext’
plotApobecDiff: no visible global function definition for ‘wilcox.test’
plotApobecDiff: no visible global function definition for ‘text’
plotApobecDiff: no visible global function definition for ‘segments’
plotApobecDiff: no visible global function definition for ‘pie’
plotApobecDiff: no visible global function definition for ‘symbols’
plotApobecDiff: no visible global function definition for ‘barplot’
plotCBS: no visible binding for global variable ‘Sample’
plotCBS: no visible binding for global variable ‘Chromosome’
plotCBS: no visible binding for global variable ‘Start_Position’
plotCBS: no visible global function definition for ‘par’
plotCBS: no visible global function definition for ‘axis’
plotCBS: no visible global function definition for ‘abline’
plotCBS: no visible global function definition for ‘rect’
plotCBS: no visible global function definition for ‘title’
plotCBS: no visible global function definition for ‘mtext’
plotCBSchr: no visible binding for global variable ‘Sample’
plotCBSchr: no visible binding for global variable ‘Chromosome’
plotCBSsegments: no visible binding for global variable ‘Chromosome’
plotCBSsegments: no visible binding for global variable
  ‘Start_Position’
plotCBSsegments: no visible binding for global variable ‘End_Position’
plotCBSsegments: no visible binding for global variable ‘Sample’
plotCBSsegments: no visible global function definition for
  ‘write.table’
plotCBSsegments: no visible global function definition for ‘.’
plotCBSsegments: no visible binding for global variable ‘Hugo_Symbol’
plotCBSsegments: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
plotCBSsegments: no visible binding for global variable ‘Segment_Start’
plotCBSsegments: no visible binding for global variable ‘Segment_End’
plotCBSsegments: no visible binding for global variable ‘Segment_Mean’
plotCBSsegments: no visible binding for global variable ‘CN’
plotCBSsegments: no visible global function definition for ‘text’
plotCBSsegments: no visible global function definition for ‘segments’
plotClusters: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
plotClusters: no visible global function definition for ‘par’
plotClusters: no visible global function definition for ‘boxplot’
plotClusters: no visible binding for global variable ‘t_vaf’
plotClusters: no visible global function definition for ‘density’
plotClusters: no visible global function definition for ‘lines’
plotClusters: no visible global function definition for ‘abline’
plotClusters: no visible global function definition for ‘axis’
plotClusters: no visible global function definition for ‘points’
plotClusters: no visible global function definition for ‘title’
plotClusters: no visible binding for global variable ‘MATH’
plotClusters: no visible global function definition for ‘segments’
plotClusters: no visible global function definition for ‘text’
plotClusters: no visible binding for global variable ‘Hugo_Symbol’
plotClusters: no visible global function definition for ‘legend’
plotClusters: no visible global function definition for ‘mtext’
plotCophenetic: no visible global function definition for ‘par’
plotCophenetic: no visible global function definition for ‘axis’
plotCophenetic: no visible global function definition for ‘lines’
plotCophenetic: no visible global function definition for ‘points’
plotCophenetic: no visible global function definition for ‘segments’
plotCophenetic: no visible binding for global variable ‘cophenetic’
plotCophenetic: no visible global function definition for ‘title’
plotEnrichmentResults: no visible binding for global variable ‘P_value’
plotEnrichmentResults: no visible binding for global variable ‘OR’
plotEnrichmentResults: no visible binding for global variable ‘Group1’
plotEnrichmentResults : <anonymous>: no visible binding for global
  variable ‘g1_muts’
plotEnrichmentResults : <anonymous>: no visible binding for global
  variable ‘g1_tot’
plotEnrichmentResults : <anonymous>: no visible binding for global
  variable ‘g2_muts’
plotEnrichmentResults : <anonymous>: no visible binding for global
  variable ‘g2_tot’
plotEnrichmentResults: no visible binding for global variable
  ‘g1_title’
plotEnrichmentResults: no visible binding for global variable ‘g1_muts’
plotEnrichmentResults: no visible binding for global variable ‘g1_tot’
plotEnrichmentResults: no visible binding for global variable
  ‘g2_title’
plotEnrichmentResults: no visible binding for global variable ‘g2_muts’
plotEnrichmentResults: no visible binding for global variable ‘g2_tot’
plotEnrichmentResults : add_legend: no visible global function
  definition for ‘par’
plotEnrichmentResults : add_legend: no visible global function
  definition for ‘legend’
plotEnrichmentResults: no visible global function definition for ‘par’
plotEnrichmentResults: no visible global function definition for
  ‘barplot’
plotEnrichmentResults: no visible global function definition for ‘axis’
plotEnrichmentResults: no visible global function definition for
  ‘segments’
plotEnrichmentResults: no visible global function definition for ‘text’
plotEnrichmentResults: no visible global function definition for
  ‘title’
plotMosdepth : <anonymous>: no visible binding for global variable
  ‘chr’
plotMosdepth : <anonymous>: no visible binding for global variable
  ‘Chromosome’
plotMosdepth: no visible binding for global variable ‘Chromosome’
plotMosdepth: no visible binding for global variable ‘Start_Position’
plotMosdepth: no visible binding for global variable ‘End_Position’
plotMosdepth: no visible global function definition for ‘.’
plotMosdepth: no visible binding for global variable ‘logR’
plotMosdepth: no visible binding for global variable ‘doc_t’
plotMosdepth: no visible binding for global variable ‘doc_n’
plotMosdepth: no visible global function definition for ‘par’
plotMosdepth : <anonymous>: no visible global function definition for
  ‘points’
plotMosdepth : <anonymous>: no visible global function definition for
  ‘rect’
plotMosdepth: no visible global function definition for ‘abline’
plotMosdepth: no visible global function definition for ‘axis’
plotMosdepth: no visible global function definition for ‘mtext’
plotMosdepth: no visible global function definition for ‘title’
plotMosdepth_t: no visible binding for global variable ‘chr’
plotMosdepth_t: no visible binding for global variable ‘start’
plotMosdepth_t: no visible global function definition for ‘median’
plotMosdepth_t: no visible binding for global variable ‘doc’
plotMosdepth_t: no visible binding for global variable ‘End_Position’
plotMosdepth_t: no visible global function definition for ‘.’
plotMosdepth_t: no visible binding for global variable ‘Chromosome’
plotMosdepth_t: no visible binding for global variable ‘doc_norm’
plotMosdepth_t: no visible binding for global variable ‘Start_Position’
plotMosdepth_t: no visible global function definition for ‘par’
plotMosdepth_t : <anonymous>: no visible global function definition for
  ‘points’
plotMosdepth_t : <anonymous>: no visible global function definition for
  ‘rect’
plotMosdepth_t : <anonymous>: no visible binding for global variable
  ‘Start_Position_updated’
plotMosdepth_t : <anonymous>: no visible binding for global variable
  ‘End_Position_updated’
plotMosdepth_t: no visible global function definition for ‘abline’
plotMosdepth_t: no visible global function definition for ‘axis’
plotMosdepth_t: no visible global function definition for ‘title’
plotOncodrive: no visible binding for global variable ‘log_fdr’
plotOncodrive: no visible binding for global variable ‘fdr’
plotOncodrive: no visible global function definition for ‘par’
plotOncodrive: no visible binding for global variable ‘significant’
plotOncodrive: no visible global function definition for ‘mtext’
plotPathways: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
plotPathways: no visible global function definition for ‘par’
plotPathways: no visible global function definition for ‘image’
plotPathways: no visible global function definition for ‘abline’
plotPathways: no visible global function definition for ‘mtext’
plotPathways: no visible global function definition for ‘text’
plotProtein: no visible binding for global variable ‘HGNC’
plotProtein: no visible binding for global variable ‘refseq.ID’
plotProtein: no visible binding for global variable ‘protein.ID’
plotProtein: no visible global function definition for ‘.’
plotProtein: no visible binding for global variable ‘aa.length’
plotProtein: no visible binding for global variable ‘domain_lenght’
plotProtein: no visible binding for global variable ‘End’
plotProtein: no visible binding for global variable ‘Start’
plotProtein: no visible binding for global variable ‘Label’
plotProtein: no visible global function definition for ‘par’
plotProtein: no visible global function definition for ‘rect’
plotProtein: no visible binding for global variable ‘domainCol’
plotProtein: no visible global function definition for ‘text’
plotProtein: no visible global function definition for ‘title’
plotProtein: no visible global function definition for ‘legend’
plotSignatures: no visible global function definition for ‘par’
plotSignatures: no visible global function definition for ‘barplot’
plotSignatures: no visible global function definition for ‘axis’
plotSignatures: no visible global function definition for ‘mtext’
plotSignatures: no visible global function definition for ‘plot.new’
plotSignatures: no visible global function definition for ‘legend’
plotSignatures: no visible global function definition for ‘title’
plotSignatures: no visible global function definition for ‘rect’
plotSignatures: no visible global function definition for ‘text’
plotTiTv: no visible binding for global variable ‘value’
plotTiTv: no visible global function definition for ‘.’
plotTiTv: no visible binding for global variable ‘variable’
plotTiTv: no visible binding for global variable ‘V1’
plotTiTv: no visible global function definition for ‘par’
plotTiTv: no visible global function definition for ‘barplot’
plotTiTv: no visible global function definition for ‘axis’
plotTiTv: no visible global function definition for ‘mtext’
plotTiTv: no visible global function definition for ‘boxplot’
plotTiTv: no visible global function definition for ‘abline’
plotVaf: no visible binding for global variable ‘Hugo_Symbol’
plotVaf: no visible binding for global variable ‘t_vaf’
plotVaf: no visible binding for global variable ‘t_alt_count’
plotVaf: no visible binding for global variable ‘t_ref_count’
plotVaf: no visible global function definition for ‘.’
plotVaf: no visible binding for global variable ‘value’
plotVaf: no visible global function definition for ‘median’
plotVaf: no visible binding for global variable ‘V1’
plotVaf: no visible global function definition for ‘par’
plotVaf: no visible global function definition for ‘boxplot’
plotVaf: no visible global function definition for ‘axis’
plotVaf: no visible global function definition for ‘abline’
plotVaf: no visible global function definition for ‘stripchart’
plotmafSummary: no visible binding for global variable ‘statFontSize’
plotmafSummary: no visible global function definition for ‘par’
plotmafSummary: no visible global function definition for ‘barplot’
plotmafSummary: no visible global function definition for ‘axis’
plotmafSummary: no visible global function definition for ‘title’
plotmafSummary: no visible binding for global variable ‘Mean’
plotmafSummary: no visible binding for global variable ‘Median’
plotmafSummary: no visible global function definition for ‘lines’
plotmafSummary: no visible binding for global variable ‘N’
plotmafSummary: no visible global function definition for ‘.’
plotmafSummary: no visible binding for global variable
  ‘Variant_Classification’
plotmafSummary: no visible global function definition for ‘boxplot’
plotmafSummary: no visible binding for global variable ‘boxStat’
plotmafSummary: no visible global function definition for ‘plot.new’
plotmafSummary: no visible global function definition for ‘legend’
prepAscat : <anonymous>: no visible binding for global variable ‘loci’
prepAscat : <anonymous>: no visible binding for global variable
  ‘tot_depth’
prepAscat : <anonymous>: no visible global function definition for ‘.’
prepAscat : <anonymous>: no visible binding for global variable ‘A’
prepAscat : <anonymous>: no visible binding for global variable ‘G’
prepAscat : <anonymous>: no visible binding for global variable ‘C’
prepAscat : <anonymous>: no visible binding for global variable ‘baf’
prepAscat : <anonymous>: no visible global function definition for
  ‘runif’
prepAscat_t : <anonymous>: no visible binding for global variable
  ‘loci’
prepAscat_t : <anonymous>: no visible binding for global variable
  ‘tot_depth’
prepAscat_t : <anonymous>: no visible global function definition for
  ‘.’
prepAscat_t : <anonymous>: no visible binding for global variable ‘A’
prepAscat_t : <anonymous>: no visible binding for global variable ‘G’
prepAscat_t : <anonymous>: no visible binding for global variable ‘C’
prepAscat_t : <anonymous>: no visible binding for global variable ‘baf’
prepAscat_t : <anonymous>: no visible global function definition for
  ‘runif’
prepAscat_t: no visible global function definition for ‘median’
prepareMutSig: no visible binding for global variable
  ‘Variant_Classification’
prepareMutSig: no visible binding for global variable ‘OG_Hugo_Symbol’
prepareMutSig: no visible binding for global variable ‘Hugo_Symbol’
prepareMutSig: no visible global function definition for ‘.’
prepareMutSig: no visible binding for global variable ‘MutSig_Synonym’
prepareMutSig: no visible binding for global variable ‘N’
prepareMutSig: no visible global function definition for ‘write.table’
print_mat: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
print_mat: no visible global function definition for ‘par’
print_mat: no visible global function definition for ‘image’
print_mat: no visible global function definition for ‘rect’
print_mat : <anonymous>: no visible binding for global variable
  ‘temp_af’
print_mat : <anonymous> : <anonymous> : <anonymous>: no visible global
  function definition for ‘points’
print_mat: no visible global function definition for ‘abline’
print_mat: no visible global function definition for ‘mtext’
rainfallPlot: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
rainfallPlot: no visible global function definition for ‘.’
rainfallPlot: no visible binding for global variable ‘Chromosome’
rainfallPlot: no visible binding for global variable ‘Hugo_Symbol’
rainfallPlot: no visible binding for global variable ‘Start_Position’
rainfallPlot: no visible binding for global variable ‘End_Position’
rainfallPlot: no visible binding for global variable ‘Reference_Allele’
rainfallPlot: no visible binding for global variable
  ‘Tumor_Seq_Allele2’
rainfallPlot: no visible binding for global variable ‘Variant_Type’
rainfallPlot: no visible global function definition for
  ‘complete.cases’
rainfallPlot: no visible global function definition for ‘par’
rainfallPlot: no visible global function definition for ‘segments’
rainfallPlot: no visible global function definition for ‘points’
rainfallPlot: no visible global function definition for ‘axis’
rainfallPlot: no visible global function definition for ‘mtext’
rainfallPlot: no visible global function definition for ‘arrows’
rainfallPlot: no visible global function definition for ‘title’
rainfallPlot: no visible global function definition for ‘legend’
rainfallPlot: no visible global function definition for ‘dev.copy’
read.maf: no visible binding for global variable ‘Mutation_Status’
read.maf: no visible binding for global variable ‘Hugo_Symbol’
read.maf: no visible binding for global variable
  ‘Variant_Classification’
read.maf: no visible global function definition for ‘.’
read.maf: no visible binding for global variable ‘Tumor_Sample_Barcode’
read.maf: no visible binding for global variable ‘Unique_Name’
read.maf: no visible binding for global variable ‘Wide_Peak_Limits’
read.maf: no visible binding for global variable ‘id’
readGistic: no visible binding for global variable ‘Unique_Name’
readGistic: no visible binding for global variable ‘Wide_Peak_Limits’
readGistic: no visible binding for global variable ‘cytoband’
readGistic: no visible binding for global variable ‘value’
readGistic: no visible global function definition for ‘.’
readGistic: no visible binding for global variable ‘variable’
readGistic : <anonymous>: no visible binding for global variable
  ‘variable’
readGistic : <anonymous>: no visible binding for global variable
  ‘cytoband’
readGistic : <anonymous>: no visible binding for global variable
  ‘TumorSampleBarcode’
readGistic: no visible binding for global variable ‘CN’
readGistic: no visible binding for global variable ‘TumorSampleBarcode’
readGistic: no visible binding for global variable ‘Variant_Type’
readGistic: no visible binding for global variable ‘Cytoband’
readGistic: no visible binding for global variable ‘peakID’
readGistic: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
readGistic: no visible binding for global variable ‘qvalues’
readSegs: no visible binding for global variable ‘Chromosome’
readSegs: no visible binding for global variable ‘Start_Position’
readSegs: no visible binding for global variable ‘End_Position’
refineClusters: no visible binding for global variable ‘t_vaf’
repelPoints: no visible binding for global variable ‘pos’
repelPoints: no visible binding for global variable ‘distance’
repelPoints: no visible global function definition for ‘.’
run_surv: no visible binding for global variable ‘Group’
run_surv: no visible global function definition for ‘pchisq’
run_surv: no visible global function definition for ‘par’
run_surv: no visible global function definition for ‘abline’
run_surv: no visible global function definition for ‘points’
run_surv: no visible binding for global variable ‘Time’
run_surv: no visible binding for global variable ‘survProb’
run_surv: no visible global function definition for ‘lines’
run_surv: no visible global function definition for ‘axis’
run_surv: no visible global function definition for ‘mtext’
run_surv: no visible global function definition for ‘legend’
run_surv: no visible global function definition for ‘title’
sampleSwaps: no visible binding for global variable ‘id’
sampleSwaps: no visible binding for global variable ‘chr’
sampleSwaps: no visible binding for global variable ‘start’
sampleSwaps : <anonymous>: no visible global function definition for
  ‘.’
sampleSwaps : <anonymous>: no visible binding for global variable ‘id’
sampleSwaps : <anonymous>: no visible binding for global variable ‘ref’
sampleSwaps : <anonymous>: no visible binding for global variable ‘alt’
sampleSwaps : <anonymous> : <anonymous>: no visible binding for global
  variable ‘vaf’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘loci’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘ref_rc’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘alt_rc’
sampleSwaps : <anonymous>: no visible binding for global variable ‘vaf’
sampleSwaps: no visible binding for global variable ‘vaf’
sampleSwaps: no visible binding for global variable ‘total’
sampleSwaps: no visible binding for global variable ‘ref_rc’
sampleSwaps: no visible binding for global variable ‘alt_rc’
sampleSwaps: no visible global function definition for ‘complete.cases’
sampleSwaps : <anonymous> : <anonymous> : <anonymous>: no visible
  global function definition for ‘fisher.test’
sampleSwaps : <anonymous> : <anonymous> : <anonymous>: no visible
  binding for global variable ‘ref_rc’
sampleSwaps : <anonymous> : <anonymous> : <anonymous>: no visible
  binding for global variable ‘alt_rc’
sampleSwaps : <anonymous> : <anonymous>: no visible global function
  definition for ‘cor.test’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘XY_possibly_paired’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘fract_concordant_snps’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘cor_coef’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘X_bam’
sampleSwaps : <anonymous>: no visible binding for global variable
  ‘Y_bam’
sampleSwaps: no visible binding for global variable
  ‘XY_possibly_paired’
segSummarize: no visible binding for global variable ‘Chromosome’
segSummarize: no visible binding for global variable ‘Start’
segSummarize: no visible binding for global variable ‘End’
segSummarize: no visible binding for global variable ‘Sample’
segSummarize: no visible binding for global variable ‘id’
segSummarize: no visible binding for global variable ‘name’
segSummarize: no visible binding for global variable ‘arm’
segSummarize: no visible binding for global variable ‘chromosome’
segSummarize: no visible global function definition for
  ‘complete.cases’
segSummarize: no visible global function definition for ‘setNames’
segSummarize : <anonymous>: no visible global function definition for
  ‘setNames’
segSummarize: no visible binding for global variable
  ‘Variant_Classification’
segSummarize: no visible global function definition for ‘.’
segSummarize: no visible binding for global variable ‘N’
segmentLogR: no visible binding for global variable ‘contig’
segmentLogR: no visible binding for global variable ‘logR’
segmentLogR: no visible binding for global variable ‘pos’
segmentLogR: no visible global function definition for ‘write.table’
segmentLogR: no visible global function definition for ‘png’
setdiffMAF: no visible binding for global variable ‘Chromosome’
setdiffMAF: no visible binding for global variable ‘Start_Position’
setdiffMAF: no visible binding for global variable ‘End_Position’
setdiffMAF: no visible global function definition for ‘.’
setdiffMAF: no visible binding for global variable ‘Reference_Allele’
setdiffMAF: no visible binding for global variable ‘Tumor_Seq_Allele2’
setdiffMAF: no visible binding for global variable ‘variant_ID’
setdiffMAF: no visible binding for global variable ‘maf_slot’
shiftPoints: no visible binding for global variable ‘pos’
signatureEnrichment: no visible global function definition for ‘kmeans’
signatureEnrichment: no visible binding for global variable ‘Cluster’
signatureEnrichment: no visible binding for global variable ‘Signature’
signatureEnrichment : <anonymous>: no visible binding for global
  variable ‘Signature’
signatureEnrichment : <anonymous>: no visible binding for global
  variable ‘Tumor_Sample_Barcode’
signatureEnrichment : <anonymous>: no visible binding for global
  variable ‘sd’
signatureEnrichment : <anonymous>: no visible binding for global
  variable ‘N’
signatureEnrichment : add_legend: no visible global function definition
  for ‘par’
signatureEnrichment : add_legend: no visible global function definition
  for ‘legend’
signatureEnrichment: no visible global function definition for ‘par’
signatureEnrichment: no visible global function definition for
  ‘barplot’
signatureEnrichment: no visible global function definition for
  ‘segments’
signatureEnrichment: no visible global function definition for ‘axis’
signatureEnrichment: no visible global function definition for ‘mtext’
signatureEnrichment: no visible global function definition for ‘title’
signatureEnrichment: no visible global function definition for
  ‘boxplot’
signatureEnrichment: no visible global function definition for ‘.’
signatureEnrichment: no visible global function definition for ‘median’
signatureEnrichment: no visible binding for global variable ‘N’
signatureEnrichment: no visible global function definition for
  ‘write.table’
somaticInteractions: no visible binding for global variable
  ‘Hugo_Symbol’
somaticInteractions: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
somaticInteractions : <anonymous> : <anonymous>: no visible global
  function definition for ‘fisher.test’
somaticInteractions: no visible binding for global variable ‘pAdj’
somaticInteractions: no visible global function definition for
  ‘p.adjust’
somaticInteractions: no visible binding for global variable ‘pValue’
somaticInteractions: no visible global function definition for ‘.’
somaticInteractions: no visible binding for global variable ‘gene1’
somaticInteractions: no visible binding for global variable ‘gene2’
somaticInteractions: no visible binding for global variable
  ‘event_ratio’
somaticInteractions: no visible binding for global variable ‘01’
somaticInteractions: no visible binding for global variable ‘10’
somaticInteractions: no visible binding for global variable ‘11’
somaticInteractions: no visible binding for global variable ‘pair’
somaticInteractions: no visible binding for global variable
  ‘AlteredSamples’
somaticInteractions: no visible global function definition for ‘par’
somaticInteractions: no visible global function definition for ‘image’
somaticInteractions: no visible global function definition for ‘abline’
somaticInteractions: no visible global function definition for ‘mtext’
somaticInteractions: no visible binding for global variable ‘Event’
somaticInteractions: no visible global function definition for ‘text’
somaticInteractions: no visible global function definition for ‘points’
somaticInteractions: no visible global function definition for ‘axis’
sortByMutation: no visible binding for global variable ‘MutatedSamples’
sortByMutation: no visible binding for global variable ‘Hugo_Symbol’
subsetMaf: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
subsetMaf: no visible binding for global variable ‘Variant_Type’
subsetMaf: no visible binding for global variable ‘Hugo_Symbol’
subsetMaf: no visible binding for global variable ‘Chromosome’
subsetMaf: no visible binding for global variable ‘Start_Position’
subsetMaf: no visible binding for global variable ‘End_Position’
summarizeGistic: no visible binding for global variable ‘Hugo_Symbol’
summarizeGistic: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
summarizeGistic: no visible global function definition for ‘.’
summarizeGistic: no visible binding for global variable
  ‘Variant_Classification’
summarizeGistic: no visible binding for global variable ‘total’
summarizeGistic: no visible binding for global variable ‘median’
summarizeGistic: no visible binding for global variable ‘Cytoband’
summarizeMaf: no visible binding for global variable ‘Variant_Type’
summarizeMaf: no visible binding for global variable ‘Hugo_Symbol’
summarizeMaf: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
summarizeMaf: no visible global function definition for ‘.’
summarizeMaf: no visible binding for global variable
  ‘Variant_Classification’
summarizeMaf: no visible binding for global variable ‘total’
summarizeMaf: no visible binding for global variable ‘CNV_total’
summarizeMaf: no visible binding for global variable ‘median’
summarizeMaf: no visible binding for global variable ‘CNV’
summarizeMaf: no visible binding for global variable ‘MutatedSamples’
summarizeMaf: no visible binding for global variable ‘Mean’
summarizeMaf: no visible binding for global variable ‘Median’
survGroup: no visible binding for global variable ‘Hugo_Symbol’
survGroup: no visible global function definition for ‘combn’
survGroup: no visible binding for global variable ‘Time’
survGroup: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
survGroup: no visible binding for global variable ‘P_value’
tcgaCompare: no visible global function definition for ‘.’
tcgaCompare: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
tcgaCompare: no visible binding for global variable ‘total’
tcgaCompare: no visible binding for global variable ‘site’
tcgaCompare: no visible binding for global variable ‘cohort’
tcgaCompare : <anonymous>: no visible global function definition for
  ‘.’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘total’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘cohort’
tcgaCompare: no visible global function definition for
  ‘pairwise.t.test’
tcgaCompare: no visible binding for global variable ‘plot_total’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘total_perMB’
tcgaCompare: no visible binding for global variable ‘total_perMB’
tcgaCompare: no visible global function definition for ‘median’
tcgaCompare: no visible binding for global variable ‘V2’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘plot_total’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘TCGA’
tcgaCompare: no visible global function definition for ‘rect’
tcgaCompare: no visible global function definition for ‘par’
tcgaCompare: no visible global function definition for ‘abline’
tcgaCompare : <anonymous>: no visible binding for global variable ‘V3’
tcgaCompare : <anonymous>: no visible global function definition for
  ‘points’
tcgaCompare: no visible global function definition for ‘axis’
tcgaCompare: no visible binding for global variable
  ‘Median_Mutations_log10’
tcgaCompare: no visible binding for global variable ‘Median_Mutations’
tcgaCompare: no visible global function definition for ‘mtext’
tcgaCompare : <anonymous>: no visible global function definition for
  ‘segments’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘Median_Mutations_log10’
tcgaCompare : <anonymous>: no visible binding for global variable
  ‘Median_Mutations’
tcgaCompare: no visible binding for global variable ‘TCGA’
tcgaCompare: no visible binding for global variable ‘Pval’
tcgaDriverBP: no visible binding for global variable ‘Hugo_Symbol’
tcgaDriverBP: no visible global function definition for ‘.’
tcgaDriverBP: no visible binding for global variable ‘AlteredSamples’
tcgaDriverBP: no visible global function definition for ‘par’
tcgaDriverBP: no visible global function definition for ‘image’
tcgaDriverBP: no visible global function definition for ‘abline’
tcgaDriverBP: no visible global function definition for ‘points’
tcgaDriverBP: no visible global function definition for ‘mtext’
tcgaDriverBP: no visible global function definition for ‘text’
tcgaDriverBP: no visible global function definition for ‘title’
tcgaDriverBP : <anonymous>: no visible binding for global variable
  ‘Gene’
tcgaDriverBP: no visible binding for global variable ‘Cancer_type’
tcgaDriverBP: no visible binding for global variable ‘Pathway’
tcgaDriverBP: no visible binding for global variable ‘ID’
tcgaDriverBP: no visible binding for global variable ‘pctAltered’
tcgaDriverBP: no visible binding for global variable ‘tcga_driver’
titv: no visible binding for global variable ‘Reference_Allele’
titv: no visible binding for global variable ‘Tumor_Seq_Allele2’
titv: no visible binding for global variable ‘con’
titv: no visible global function definition for ‘.’
titv: no visible binding for global variable ‘Tumor_Sample_Barcode’
titv: no visible binding for global variable ‘N’
titv: no visible binding for global variable ‘con.class’
titv: no visible binding for global variable ‘fract’
titv: no visible binding for global variable ‘nVars’
titv: no visible binding for global variable ‘TiTv’
titv: no visible global function definition for ‘write.table’
tmb: no visible binding for global variable ‘size’
tmb: no visible binding for global variable ‘end’
tmb: no visible binding for global variable ‘start’
tmb: no visible global function definition for ‘.’
tmb: no visible binding for global variable ‘Tumor_Sample_Barcode’
tmb: no visible binding for global variable ‘total’
tmb: no visible binding for global variable ‘total_perMB’
tmb: no visible binding for global variable ‘total_perMB_log’
tmb: no visible global function definition for ‘median’
tmb: no visible global function definition for ‘par’
tmb: no visible global function definition for ‘grid’
tmb: no visible global function definition for ‘abline’
tmb: no visible global function definition for ‘points’
tmb: no visible global function definition for ‘adjustcolor’
tmb: no visible global function definition for ‘title’
tmb: no visible global function definition for ‘axis’
tmb: no visible global function definition for ‘mtext’
tmb: no visible global function definition for ‘boxplot’
tmb: no visible global function definition for ‘stripchart’
transformSegments: no visible binding for global variable
  ‘Start_Position’
transformSegments: no visible binding for global variable
  ‘End_Position’
transformSegments: no visible binding for global variable ‘Chromosome’
trinucleotideMatrix: no visible binding for global variable ‘pkgname’
trinucleotideMatrix: no visible binding for global variable
  ‘Chromosome’
trinucleotideMatrix: no visible binding for global variable
  ‘Start_Position’
trinucleotideMatrix: no visible binding for global variable
  ‘End_Position’
trinucleotideMatrix: no visible binding for global variable ‘N’
trinucleotideMatrix: no visible binding for global variable ‘Start’
trinucleotideMatrix: no visible binding for global variable ‘End’
trinucleotideMatrix: no visible binding for global variable ‘upstream’
trinucleotideMatrix: no visible binding for global variable
  ‘downstream’
trinucleotideMatrix: no visible global function definition for ‘.’
trinucleotideMatrix: no visible binding for global variable ‘A’
trinucleotideMatrix: no visible binding for global variable ‘C’
trinucleotideMatrix: no visible binding for global variable ‘G’
trinucleotideMatrix: no visible binding for global variable
  ‘trinucleotide’
trinucleotideMatrix: no visible binding for global variable ‘updown’
trinucleotideMatrix: no visible binding for global variable ‘TCA’
trinucleotideMatrix: no visible binding for global variable ‘TCT’
trinucleotideMatrix: no visible binding for global variable ‘AGA’
trinucleotideMatrix: no visible binding for global variable ‘TGA’
trinucleotideMatrix: no visible binding for global variable ‘tcw’
trinucleotideMatrix: no visible binding for global variable ‘wga’
trinucleotideMatrix: no visible binding for global variable
  ‘Substitution’
trinucleotideMatrix: no visible binding for global variable
  ‘SubstitutionType’
trinucleotideMatrix: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
trinucleotideMatrix: no visible binding for global variable ‘n_A’
trinucleotideMatrix: no visible binding for global variable ‘A>C’
trinucleotideMatrix: no visible binding for global variable ‘A>G’
trinucleotideMatrix: no visible binding for global variable ‘A>T’
trinucleotideMatrix: no visible binding for global variable ‘n_T’
trinucleotideMatrix: no visible binding for global variable ‘T>A’
trinucleotideMatrix: no visible binding for global variable ‘T>C’
trinucleotideMatrix: no visible binding for global variable ‘T>G’
trinucleotideMatrix: no visible binding for global variable ‘n_G’
trinucleotideMatrix: no visible binding for global variable ‘G>A’
trinucleotideMatrix: no visible binding for global variable ‘G>C’
trinucleotideMatrix: no visible binding for global variable ‘G>T’
trinucleotideMatrix: no visible binding for global variable ‘n_C’
trinucleotideMatrix: no visible binding for global variable ‘C>A’
trinucleotideMatrix: no visible binding for global variable ‘C>G’
trinucleotideMatrix: no visible binding for global variable ‘C>T’
trinucleotideMatrix: no visible binding for global variable
  ‘n_mutations’
trinucleotideMatrix: no visible binding for global variable
  ‘SubstitutionMotif’
trinucleotideMatrix: no visible binding for global variable ‘tCw_to_A’
trinucleotideMatrix: no visible binding for global variable ‘T[C>A]A’
trinucleotideMatrix: no visible binding for global variable ‘T[C>A]T’
trinucleotideMatrix: no visible binding for global variable ‘tCw_to_G’
trinucleotideMatrix: no visible binding for global variable ‘T[C>G]A’
trinucleotideMatrix: no visible binding for global variable ‘T[C>G]T’
trinucleotideMatrix: no visible binding for global variable ‘tCw_to_T’
trinucleotideMatrix: no visible binding for global variable ‘T[C>T]A’
trinucleotideMatrix: no visible binding for global variable ‘T[C>T]T’
trinucleotideMatrix: no visible binding for global variable ‘tCw’
trinucleotideMatrix: no visible binding for global variable ‘wGa_to_C’
trinucleotideMatrix: no visible binding for global variable ‘A[G>C]A’
trinucleotideMatrix: no visible binding for global variable ‘T[G>C]A’
trinucleotideMatrix: no visible binding for global variable ‘wGa_to_T’
trinucleotideMatrix: no visible binding for global variable ‘A[G>T]A’
trinucleotideMatrix: no visible binding for global variable ‘T[G>T]A’
trinucleotideMatrix: no visible binding for global variable ‘wGa_to_A’
trinucleotideMatrix: no visible binding for global variable ‘A[G>A]A’
trinucleotideMatrix: no visible binding for global variable ‘T[G>A]A’
trinucleotideMatrix: no visible binding for global variable ‘wGa’
trinucleotideMatrix: no visible binding for global variable
  ‘tCw_to_G+tCw_to_T’
trinucleotideMatrix: no visible binding for global variable
  ‘APOBEC_Enrichment’
trinucleotideMatrix: no visible binding for global variable
  ‘n_C>G_and_C>T’
trinucleotideMatrix: no visible binding for global variable
  ‘non_APOBEC_mutations’
trinucleotideMatrix: no visible binding for global variable
  ‘fraction_APOBEC_mutations’
trinucleotideMatrix : <anonymous>: no visible global function
  definition for ‘fisher.test’
trinucleotideMatrix: no visible binding for global variable
  ‘fisher_pvalue’
trinucleotideMatrix: no visible binding for global variable ‘fdr’
trinucleotideMatrix: no visible global function definition for
  ‘p.adjust’
trinucleotideMatrix: no visible binding for global variable
  ‘APOBEC_Enriched’
trinucleotideMatrix: no visible binding for global variable
  ‘SubstitutionTypeMotif’
trinucleotideMatrix: no visible global function definition for
  ‘write.table’
vafCompare: no visible binding for global variable ‘Hugo_Symbol’
vafCompare: no visible binding for global variable ‘t_vaf’
vafCompare: no visible binding for global variable ‘t_alt_count’
vafCompare: no visible binding for global variable ‘t_ref_count’
vafCompare: no visible global function definition for ‘.’
vafCompare: no visible binding for global variable ‘Cohort’
vafCompare: no visible global function definition for ‘layout’
vafCompare: no visible global function definition for ‘par’
vafCompare: no visible global function definition for ‘boxplot’
vafCompare: no visible global function definition for ‘stripchart’
vafCompare: no visible global function definition for ‘axis’
vafCompare: no visible global function definition for ‘title’
vafCompare: no visible global function definition for ‘abline’
vafCompare: no visible global function definition for ‘t.test’
vafCompare: no visible global function definition for ‘text’
validateMaf: no visible binding for global variable ‘variantId’
validateMaf: no visible binding for global variable ‘Chromosome’
validateMaf: no visible binding for global variable ‘Start_Position’
validateMaf: no visible binding for global variable
  ‘Tumor_Sample_Barcode’
validateMaf: no visible binding for global variable ‘Reference_Allele’
validateMaf: no visible binding for global variable ‘Tumor_Seq_Allele2’
validateMaf: no visible binding for global variable ‘Hugo_Symbol’
validateMaf: no visible binding for global variable
  ‘Variant_Classification’
validateMaf: no visible binding for global variable ‘Variant_Type’
validateMaf: no visible binding for global variable ‘End_Position’
write.GisticSummary: no visible global function definition for
  ‘write.table’
write.mafSummary: no visible global function definition for
  ‘write.table’
Undefined global functions or variables:
  . 01 10 11 A A>C A>G A>T AAChange AAChange.refGene AAChange_ AGA
  APOBEC_Enriched APOBEC_Enrichment A[G>A]A A[G>C]A A[G>T]A Alt
  AlteredSamples Amp Analysis C C>A C>G C>T CN CNV CNV_total
  Cancer_type Chromosome Cluster Cohort Cytoband Del Description
  DomainLabel End End_Position End_Position_updated Entrez
  Entrez_Gene_Id Event ExonicFunc.refGene Feature_1 Feature_2
  Fraction_mutated_samples Freq Func.refGene G G1 G1_wt G2 G2_wt G>A
  G>C G>T G_Score Gene Gene.refGene Genotype Group Group1 Group2 HGNC
  Hugo_Symbol ID Ins Label MATH Mean Median Median_Mutations
  Median_Mutations_log10 MutSig_Synonym MutatedSamples
  MutatedSamples_m1 MutatedSamples_m2 Mutated_samples Mutation_Status N
  N.x N.y OG_Hugo_Symbol OR OR_high OR_low P_value Pathway Pval Ref
  Reference_Allele Sample SampleSize Segment_End Segment_Mean
  Segment_Start Signature Size Start Start_Position
  Start_Position_updated Substitution SubstitutionMotif
  SubstitutionType SubstitutionTypeMotif T>A T>C T>G TCA TCGA TCT TGA
  T[C>A]A T[C>A]T T[C>G]A T[C>G]T T[C>T]A T[C>T]T T[G>A]A T[G>C]A
  T[G>T]A TiTv Time TumorSampleBarcode Tumor_Sample_Barcode
  Tumor_Seq_Allele2 Unique_Name V1 V2 V3 VAF VC Var1 Var2
  Variant_Classification Variant_Classification_temp Variant_Type
  Wide_Peak_Limits XY_possibly_paired X_bam Y_bam aa.length abline
  adjPval adjustcolor alt alt_rc amp anno_Position arm arrows
  assembly_version axis baf barplot bg box boxStat boxplot browseURL
  category cf chr chromosome chromosome_end chromosome_start ci.low
  ci.up cn cohort colorRampPalette combn complete.cases con con.class
  consequence_type contig conv cophenetic cor.test cor_coef count
  count2 cytoband dbinom density dev.copy distance doc doc_n doc_norm
  doc_t domainCol domain_lenght download.file downstream dp end endDist
  ens_id event_ratio fdr fisher.test fisher_pvalue fract fractMutated
  fract_concordant_snps fract_muts_in_clusters fraction
  fraction_APOBEC_mutations fraction_affected fs g1_muts g1_title
  g1_tot g2_muts g2_title g2_tot gene1 gene2 gene_affected gistic glm
  grid head heat.colors hgnc_symbol i.End_Position i.Start_Position
  icgc_sample_id id idx image kmeans lab labThis label layout legend
  lines loc loci logR log_fdr log_q lower maf_slot max_alt median mtext
  mutated_from_allele mutated_to_allele mutload muts_in_clusters n
  nGenes nMut nMuts nVars n_A n_C n_C>G_and_C>T n_G n_T
  n_affected_genes n_mutated_Feature n_mutated_Feature1
  n_mutated_Feature2 n_mutated_group1 n_mutated_group2 n_mutations
  na.omit name nonApobec non_APOBEC_mutations or or_new p.adjust pAdj
  pValue p_value pair pairwise.t.test pairwise.table par pchisq
  pctAltered pct_alt peakID pfam pie pkgname plot.new plot_total png
  pnorm points poisson poisson.test poissonFdr pos pos2 posRounded
  protein.ID pval qf qnorm qvalues read.csv rect ref ref_alt
  ref_alt_diff ref_alt_len ref_rc reference_genome_allele refseq.ID
  row_id row_idx rug runif sd segments sequencing_strategy setNames
  setTxtProgressBar significant site size start startDist statFontSize
  stripchart survProb symbols t.test tCw tCw_to_A tCw_to_G
  tCw_to_G+tCw_to_T tCw_to_T tFdr t_alt_count t_depth t_ref_count t_vaf
  tcga_driver tcw temp_af text th title tot tot_depth total total_perMB
  total_perMB_log trinucleotide txtProgressBar unit updown upper
  upstream vaf value variable variantId variant_ID
  verification_platform verification_status wGa wGa_to_A wGa_to_C
  wGa_to_T wga wilcox.test write.table ystart
Consider adding
  importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.copy",
             "heat.colors", "png")
  importFrom("graphics", "abline", "arrows", "axis", "barplot", "box",
             "boxplot", "grid", "image", "layout", "legend", "lines",
             "mtext", "par", "pie", "plot.new", "points", "rect", "rug",
             "segments", "stripchart", "symbols", "text", "title")
  importFrom("stats", "C", "complete.cases", "cophenetic", "cor.test",
             "dbinom", "density", "end", "fisher.test", "glm", "kmeans",
             "median", "na.omit", "p.adjust", "pairwise.t.test",
             "pairwise.table", "pchisq", "pnorm", "poisson",
             "poisson.test", "qf", "qnorm", "runif", "sd", "setNames",
             "start", "t.test", "wilcox.test")
  importFrom("utils", "browseURL", "combn", "download.file", "head",
             "read.csv", "setTxtProgressBar", "txtProgressBar",
             "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotMosdepth.Rd: DNAcopy
  plotMosdepth_t.Rd: DNAcopy
  segSummarize.Rd: segment
  segmentLogR.Rd: DNAcopy
  subsetMaf.Rd: foverlaps
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/maftools/libs/maftools.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘maftools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: segSummarize
> ### Title: Summarize CBS segmentation results
> ### Aliases: segSummarize
> 
> ### ** Examples
> 
> laml.seg <- system.file("extdata", "LAML_CBS_segments.tsv.gz", package = "maftools")
> segSummarize(seg = laml.seg)
Recurrent chromosomal arm aberrations
       arm Variant_Classification     N
    <char>                 <char> <int>
 1:    5_q                   Loss     9
 2:   16_q                   Loss     2
 3:   21_q                   Gain     2
 4:    7_q                   Loss     2
 5:    1_p                   Gain     1
 6:    1_q                   Gain     1
 7:   11_p                   Loss     1
 8:   11_q                   Gain     1
 9:   12_p                   Loss     1
10:   18_p                   Loss     1
11:   19_q                   Gain     1
12:   19_p                   Gain     1
13:   20_q                   Loss     1
14:    3_p                   Loss     1
15:    7_p                   Loss     1
16:    8_q                   Gain     1
17:    9_q                   Loss     1
$heatmap_matrix
          TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807
1_p36.32             2            2     2.000000     2.000000            2
1_p36.31             2            2     2.000000     2.000000            2
1_p36.23             2            2     2.000000     2.000000            2
1_p36.22             2            2     2.000000     2.000000            2
1_p36.21             2            2     2.000000     2.000000            2
1_p36.13             2            2     2.000000     2.000000            2
1_p36.12             2            2     2.000000     2.000000            2
1_p36.11             2            2     2.000000     2.000000            2
1_p35.3              2            2     2.000000     2.000000            2
1_p35.2              2            2     2.000000     2.000000            2
1_p35.1              2            2     2.000000     2.000000            2
1_p34.3              2            2     2.000000     2.000000            2
1_p34.2              2            2     2.000000     2.000000            2
1_p34.1              2            2     2.000000     2.000000            2
1_p33                2            2     2.000000     2.000000            2
1_p32.3              2            2     2.000000     2.000000            2
1_p32.2              2            2     2.000000     2.000000            2
1_p32.1              2            2     2.000000     2.000000            2
1_p31.3              2            2     2.000000     2.000000            2
1_p31.2              2            2     2.000000     2.000000            2
1_p31.1              2            2     2.000000     2.000000            2
1_p22.3              2            2     2.000000     2.000000            2
1_p22.2              2            2     2.000000     2.000000            2
1_p22.1              2            2     2.000000     2.000000            2
1_p21.3              2            2     2.000000     2.000000            2
1_p21.2              2            2     2.000000     2.000000            2
1_p21.1              2            2     2.000000     2.000000            2
1_p13.3              2            2     2.000000     2.000000            2
1_p13.2              2            2     2.000000     2.000000            2
1_p13.1              2            2     2.000000     2.000000            2
1_p12                2            2     2.000000     2.000000            2
1_p11.2              2            2     2.000000     2.000000            2
1_p11.1              2            2     2.000000     2.000000            2
1_q11                2            2     2.000000     2.000000            2
1_q12                2            2     2.000000     2.000000            2
1_q21.1              2            2     2.000000     2.000000            2
1_q21.2              2            2     2.000000     2.000000            2
1_q21.3              2            2     2.000000     2.000000            2
1_q22                2            2     2.000000     2.000000            2
1_q23.1              2            2     2.000000     2.000000            2
1_q23.2              2            2     2.000000     2.000000            2
1_q23.3              2            2     2.000000     2.000000            2
1_q24.1              2            2     2.000000     2.000000            2
1_q24.2              2            2     2.000000     2.000000            2
1_q24.3              2            2     2.000000     2.000000            2
1_q25.1              2            2     2.000000     2.000000            2
1_q25.2              2            2     2.000000     2.000000            2
1_q25.3              2            2     2.000000     2.000000            2
1_q31.1              2            2     2.000000     2.000000            2
1_q31.2              2            2     2.000000     2.000000            2
1_q31.3              2            2     2.000000     2.000000            2
1_q32.1              2            2     2.000000     2.000000            2
1_q32.2              2            2     2.000000     2.000000            2
1_q32.3              2            2     2.000000     2.000000            2
1_q41                2            2     2.000000     2.000000            2
1_q42.11             2            2     2.000000     2.000000            2
1_q42.12             2            2     2.000000     2.000000            2
1_q42.13             2            2     2.000000     2.000000            2
1_q42.2              2            2     2.000000     2.000000            2
1_q42.3              2            2     2.000000     2.000000            2
1_q43                2            2     2.000000     2.000000            2
1_q44                2            2     2.000000     2.000000            2
2_p25.3              2            2     2.000000     2.000000            2
2_p25.2              2            2     2.000000     2.000000            2
2_p25.1              2            2     2.000000     2.000000            2
2_p24.3              2            2     2.000000     2.000000            2
2_p24.2              2            2     2.000000     2.000000            2
2_p24.1              2            2     2.000000     2.000000            2
2_p23.3              2            2     2.000000     2.000000            2
2_p23.2              2            2     2.000000     2.000000            2
2_p23.1              2            2     2.000000     2.000000            2
2_p22.3              2            2     2.000000     2.000000            2
2_p22.2              2            2     2.000000     2.000000            2
2_p22.1              2            2     2.000000     2.000000            2
2_p21                2            2     2.000000     2.000000            2
2_p16.3              2            2     2.000000     2.000000            2
2_p16.2              2            2     2.000000     2.000000            2
2_p16.1              2            2     2.000000     2.000000            2
2_p15                2            2     2.000000     2.000000            2
2_p14                2            2     2.000000     2.000000            2
2_p13.3              2            2     2.000000     2.000000            2
2_p13.2              2            2     2.000000     2.000000            2
2_p13.1              2            2     2.000000     2.000000            2
2_p12                2            2     2.000000     2.000000            2
2_p11.2              2            2     2.000000     2.000000            2
2_p11.1              2            2     2.000000     2.000000            2
2_q11.1              2            2     2.000000     2.000000            2
2_q11.2              2            2     2.000000     2.000000            2
2_q12.1              2            2     2.000000     2.000000            2
2_q12.2              2            2     2.000000     2.000000            2
2_q12.3              2            2     2.000000     2.000000            2
2_q13                2            2     2.000000     2.000000            2
2_q14.1              2            2     2.000000     2.000000            2
2_q14.2              2            2     2.000000     2.000000            2
2_q14.3              2            2     2.000000     2.000000            2
2_q21.1              2            2     2.000000     2.000000            2
2_q21.2              2            2     2.000000     2.000000            2
2_q21.3              2            2     2.000000     2.000000            2
2_q22.1              2            2     2.000000     2.000000            2
2_q22.2              2            2     2.000000     2.000000            2
2_q22.3              2            2     2.000000     2.000000            2
2_q23.1              2            2     2.000000     2.000000            2
2_q23.2              2            2     2.000000     2.000000            2
2_q23.3              2            2     2.000000     2.000000            2
2_q24.1              2            2     2.000000     2.000000            2
2_q24.2              2            2     2.000000     2.000000            2
2_q24.3              2            2     2.000000     2.000000            2
2_q31.1              2            2     2.000000     2.000000            2
2_q31.2              2            2     2.000000     2.000000            2
2_q31.3              2            2     2.000000     2.000000            2
2_q32.1              2            2     2.000000     2.000000            2
2_q32.2              2            2     2.000000     2.000000            2
2_q32.3              2            2     2.000000     2.000000            2
2_q33.1              2            2     2.000000     2.000000            2
2_q33.2              2            2     2.000000     2.000000            2
2_q33.3              2            2     2.000000     2.000000            2
2_q34                2            2     2.000000     2.000000            2
2_q35                2            2     2.000000     2.000000            2
2_q36.1              2            2     2.000000     2.000000            2
2_q36.2              2            2     2.000000     2.000000            2
2_q36.3              2            2     2.000000     2.000000            2
2_q37.1              2            2     2.000000     2.000000            2
2_q37.2              2            2     2.000000     2.000000            2
2_q37.3              2            2     2.000000     2.000000            2
3_p26.3              2            2     2.000000     2.000000            2
3_p26.2              2            2     2.000000     2.000000            2
3_p26.1              2            2     2.000000     2.000000            2
3_p25.3              2            2     2.000000     2.000000            2
3_p25.2              2            2     2.000000     2.000000            2
3_p25.1              2            2     2.000000     2.000000            2
3_p24.3              2            2     2.000000     2.000000            2
3_p24.2              2            2     2.000000     2.000000            2
3_p24.1              2            2     2.000000     2.000000            2
3_p23                2            2     2.000000     2.000000            2
3_p22.3              2            2     2.000000     2.000000            2
3_p22.2              2            2     2.000000     2.000000            2
3_p22.1              2            2     2.000000     2.000000            2
3_p21.33             2            2     2.000000     2.000000            2
3_p21.32             2            2     2.000000     2.000000            2
3_p21.31             2            2     2.000000     2.000000            2
3_p21.2              2            2     2.000000     2.000000            2
3_p21.1              2            2     2.000000     2.000000            2
3_p14.3              2            2     2.000000     2.000000            2
3_p14.2              2            2     2.000000     2.000000            2
3_p14.1              2            2     2.000000     2.000000            2
3_p13                2            2     2.000000     2.000000            2
3_p12.3              2            2     2.000000     2.000000            2
3_p12.2              2            2     2.000000     2.000000            2
3_p12.1              2            2     2.000000     2.000000            2
3_p11.2              2            2     2.000000     2.000000            2
3_p11.1              2            2     2.000000     2.000000            2
3_q11.1              2            2     2.000000     2.000000            2
3_q11.2              2            2     2.000000     2.000000            2
3_q12.1              2            2     2.000000     2.000000            2
3_q12.2              2            2     2.000000     2.000000            2
3_q12.3              2            2     2.000000     2.000000            2
3_q13.11             2            2     2.000000     2.000000            2
3_q13.12             2            2     2.000000     2.000000            2
3_q13.13             2            2     2.000000     2.000000            2
3_q13.2              2            2     2.000000     2.000000            2
3_q13.31             2            2     2.000000     2.000000            2
3_q13.32             2            2     2.000000     2.000000            2
3_q13.33             2            2     2.000000     2.000000            2
3_q21.1              2            2     2.000000     2.000000            2
3_q21.2              2            2     2.000000     2.000000            2
3_q21.3              2            2     2.000000     2.000000            2
3_q22.1              2            2     2.000000     2.000000            2
3_q22.2              2            2     2.000000     2.000000            2
3_q22.3              2            2     2.000000     2.000000            2
3_q23                2            2     2.000000     2.000000            2
3_q24                2            2     2.000000     2.000000            2
3_q25.1              2            2     2.000000     2.000000            2
3_q25.2              2            2     2.000000     2.000000            2
3_q25.31             2            2     2.000000     2.000000            2
3_q25.32             2            2     2.000000     2.000000            2
3_q25.33             2            2     2.000000     2.000000            2
3_q26.1              2            2     2.000000     2.000000            2
3_q26.2              2            2     2.000000     2.000000            2
3_q26.31             2            2     2.000000     2.000000            2
3_q26.32             2            2     2.000000     2.000000            2
3_q26.33             2            2     2.000000     2.000000            2
3_q27.1              2            2     2.000000     2.000000            2
3_q27.2              2            2     2.000000     2.000000            2
3_q27.3              2            2     2.000000     2.000000            2
3_q28                2            2     2.000000     2.000000            2
3_q29                2            2     2.000000     2.000000            2
4_p16.3              2            2     2.000000     2.000000            2
4_p16.2              2            2     2.000000     2.000000            2
4_p16.1              2            2     2.000000     2.000000            2
4_p15.33             2            2     2.000000     2.000000            2
4_p15.32             2            2     2.000000     2.000000            2
4_p15.31             2            2     2.000000     2.000000            2
4_p15.2              2            2     2.000000     2.000000            2
4_p15.1              2            2     2.000000     2.000000            2
4_p14                2            2     2.000000     2.000000            2
4_p13                2            2     2.000000     2.000000            2
4_p12                2            2     2.000000     2.000000            2
4_p11                2            2     2.000000     2.000000            2
4_q11                2            2     2.000000     2.000000            2
4_q12                2            2     2.000000     2.000000            2
4_q13.1              2            2     2.000000     2.000000            2
4_q13.2              2            2     2.000000     2.000000            2
4_q13.3              2            2     2.000000     2.000000            2
4_q21.1              2            2     2.000000     2.000000            2
4_q21.21             2            2     2.000000     2.000000            2
4_q21.22             2            2     2.000000     2.000000            2
4_q21.23             2            2     2.000000     2.000000            2
4_q21.3              2            2     2.000000     2.000000            2
4_q22.1              2            2     2.000000     2.000000            2
4_q22.2              2            2     2.000000     2.000000            2
4_q22.3              2            2     2.000000     2.000000            2
4_q23                2            2     2.000000     2.000000            2
4_q24                2            2     2.000000     2.000000            2
4_q25                2            2     2.000000     2.000000            2
4_q26                2            2     2.000000     2.000000            2
4_q27                2            2     2.000000     2.000000            2
4_q28.1              2            2     2.000000     2.000000            2
4_q28.2              2            2     2.000000     2.000000            2
4_q28.3              2            2     2.000000     2.000000            2
4_q31.1              2            2     2.000000     2.000000            2
4_q31.21             2            2     2.000000     2.000000            2
4_q31.22             2            2     2.000000     2.000000            2
4_q31.23             2            2     2.000000     2.000000            2
4_q31.3              2            2     2.000000     2.000000            2
4_q32.1              2            2     2.000000     2.000000            2
4_q32.2              2            2     2.000000     2.000000            2
4_q32.3              2            2     2.000000     2.000000            2
4_q33                2            2     2.000000     2.000000            2
4_q34.1              2            2     2.000000     2.000000            2
4_q34.2              2            2     2.000000     2.000000            2
4_q34.3              2            2     2.000000     2.000000            2
4_q35.1              2            2     2.000000     2.000000            2
4_q35.2              2            2     2.000000     2.000000            2
5_p15.33             2            2     2.000000     2.000000            2
5_p15.32             2            2     2.000000     2.000000            2
5_p15.31             2            2     2.000000     2.000000            2
5_p15.2              2            2     2.000000     2.000000            2
5_p15.1              2            2     2.000000     2.000000            2
5_p14.3              2            2     2.000000     2.000000            2
5_p14.2              2            2     2.000000     2.000000            2
5_p14.1              2            2     2.000000     2.000000            2
5_p13.3              2            2     2.000000     2.000000            2
5_p13.2              2            2     2.000000     2.000000            2
5_p13.1              2            2     2.000000     2.000000            2
5_p12                2            2     2.000000     2.000000            2
5_q11.1              2            2     2.000000     2.000000            2
5_q11.2              2            2     2.000000     2.000000            2
5_q12.1              2            2     2.000000     2.000000            2
5_q12.2              2            2     2.000000     2.000000            2
5_q12.3              2            2     2.000000     2.000000            2
5_q13.1              2            2     2.000000     2.000000            2
5_q13.2              2            2     2.000000     2.000000            2
5_q13.3              2            2     2.000000     2.000000            2
5_q14.1              2            2     2.000000     2.000000            2
5_q14.2              2            2     2.000000     2.000000            2
5_q14.3              2            2     2.000000     2.000000            2
5_q15                2            2     2.000000     2.000000            2
5_q21.1              2            2     2.000000     2.000000            2
5_q21.2              2            2     2.000000     2.000000            2
5_q21.3              2            2     2.000000     2.000000            2
5_q22.1              2            2     2.000000     2.000000            2
5_q22.2              2            2     2.000000     2.000000            2
5_q22.3              2            2     2.000000     2.000000            2
5_q23.1              2            2     2.000000     2.000000            2
5_q23.2              2            2     2.000000     2.000000            2
5_q23.3              2            2     2.000000     2.000000            2
5_q31.1              2            2     2.000000     2.000000            2
5_q31.2              2            2     2.000000     2.000000            2
5_q31.3              2            2     2.000000     2.000000            2
5_q32                2            2     2.000000     2.000000            2
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10_q26.11     2.000000     2.000000     2.000000            2            2
10_q26.12     2.000000     2.000000     2.000000            2            2
10_q26.13     2.000000     2.000000     2.000000            2            2
10_q26.2      2.000000     2.000000     2.000000            2            2
10_q26.3      2.000000     2.109952     2.000000            2            2
11_p15.5      2.000000     2.000000     2.000000            2            2
11_p15.4      2.000000     2.000000     2.000000            2            2
11_p15.3      2.000000     2.000000     2.000000            2            2
11_p15.2      2.000000     2.000000     2.000000            2            2
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11_p12        2.000000     2.000000     2.000000            2            2
11_p11.2      2.000000     2.000000     2.000000            2            2
11_p11.12     2.000000     2.000000     2.000000            2            2
11_p11.11     2.000000     2.000000     2.000000            2            2
11_q11        2.000000     2.000000     2.000000            2            2
11_q12.1      2.000000     2.000000     2.000000            2            2
11_q12.2      2.000000     2.000000     2.000000            2            2
11_q12.3      2.000000     2.000000     2.000000            2            2
11_q13.1      2.000000     2.000000     2.000000            2            2
11_q13.2      2.000000     2.000000     2.000000            2            2
11_q13.3      2.000000     2.000000     2.000000            2            2
11_q13.4      2.000000     2.000000     2.000000            2            2
11_q13.5      2.000000     2.000000     2.000000            2            2
11_q14.1      2.000000     2.000000     2.000000            2            2
11_q14.2      2.000000     2.000000     2.000000            2            2
11_q14.3      2.000000     2.000000     2.000000            2            2
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11_q22.1      2.000000     2.000000     2.000000            2            2
11_q22.2      2.000000     2.000000     2.000000            2            2
11_q22.3      2.000000     2.000000     2.000000            2            2
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11_q23.2      2.000000     2.000000     2.000000            2            2
11_q23.3      2.000000     2.000000     2.000000            2            2
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11_q24.2      2.000000     2.000000     2.000000            2            2
11_q24.3      2.000000     2.000000     2.000000            2            2
11_q25        2.000000     2.000000     2.000000            2            2
          TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2842 TCGA-AB-2844
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
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11_q25               2            2            2     2.000000            2
          TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2861
1_p36.32             2     2.000000            2     2.000000            2
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1_p36.23             2     2.000000            2     2.000000            2
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1_p22.1              2     2.000000            2     2.000000            2
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1_p13.3              2     2.000000            2     2.000000            2
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1_p12                2     2.000000            2     2.000000            2
1_p11.2              2     2.000000            2     2.000000            2
1_p11.1              2     2.000000            2     2.000000            2
1_q11                2     2.000000            2     2.000000            2
1_q12                2     2.000000            2     2.000000            2
1_q21.1              2     2.000000            2     2.000000            2
1_q21.2              2     2.000000            2     2.000000            2
1_q21.3              2     2.000000            2     2.000000            2
1_q22                2     2.000000            2     2.000000            2
1_q23.1              2     2.000000            2     2.000000            2
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1_q23.3              2     2.000000            2     2.000000            2
1_q24.1              2     2.000000            2     2.000000            2
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1_q24.3              2     2.000000            2     2.000000            2
1_q25.1              2     2.000000            2     2.000000            2
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1_q25.3              2     2.000000            2     2.000000            2
1_q31.1              2     2.000000            2     2.000000            2
1_q31.2              2     2.000000            2     2.000000            2
1_q31.3              2     2.000000            2     2.000000            2
1_q32.1              2     2.000000            2     2.000000            2
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1_q32.3              2     2.000000            2     2.000000            2
1_q41                2     2.000000            2     2.000000            2
1_q42.11             2     2.000000            2     2.000000            2
1_q42.12             2     2.000000            2     2.000000            2
1_q42.13             2     2.000000            2     2.000000            2
1_q42.2              2     2.000000            2     2.000000            2
1_q42.3              2     2.000000            2     2.000000            2
1_q43                2     2.000000            2     2.000000            2
1_q44                2     2.000000            2     2.000000            2
2_p25.3              2     2.000000            2     2.000000            2
2_p25.2              2     2.000000            2     2.000000            2
2_p25.1              2     2.000000            2     2.000000            2
2_p24.3              2     2.000000            2     2.000000            2
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2_p24.1              2     2.000000            2     2.000000            2
2_p23.3              2     2.000000            2     2.000000            2
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2_p23.1              2     2.000000            2     2.000000            2
2_p22.3              2     2.000000            2     2.000000            2
2_p22.2              2     2.000000            2     2.000000            2
2_p22.1              2     2.000000            2     2.000000            2
2_p21                2     2.000000            2     2.000000            2
2_p16.3              2     2.000000            2     2.000000            2
2_p16.2              2     2.000000            2     2.000000            2
2_p16.1              2     2.000000            2     2.000000            2
2_p15                2     2.000000            2     2.000000            2
2_p14                2     2.000000            2     2.000000            2
2_p13.3              2     2.000000            2     2.000000            2
2_p13.2              2     2.000000            2     2.000000            2
2_p13.1              2     2.000000            2     2.000000            2
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2_p11.2              2     2.000000            2     2.000000            2
2_p11.1              2     2.000000            2     2.000000            2
2_q11.1              2     2.000000            2     2.000000            2
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2_q12.1              2     2.000000            2     2.000000            2
2_q12.2              2     2.000000            2     2.000000            2
2_q12.3              2     2.000000            2     2.000000            2
2_q13                2     2.000000            2     2.000000            2
2_q14.1              2     2.000000            2     2.000000            2
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2_q14.3              2     2.000000            2     2.000000            2
2_q21.1              2     2.000000            2     2.000000            2
2_q21.2              2     2.000000            2     2.000000            2
2_q21.3              2     2.000000            2     2.000000            2
2_q22.1              2     2.000000            2     2.000000            2
2_q22.2              2     2.000000            2     2.000000            2
2_q22.3              2     2.000000            2     2.000000            2
2_q23.1              2     2.000000            2     2.000000            2
2_q23.2              2     2.000000            2     2.000000            2
2_q23.3              2     2.000000            2     2.000000            2
2_q24.1              2     2.000000            2     2.000000            2
2_q24.2              2     2.000000            2     2.000000            2
2_q24.3              2     2.000000            2     2.000000            2
2_q31.1              2     2.000000            2     2.000000            2
2_q31.2              2     2.000000            2     2.000000            2
2_q31.3              2     2.000000            2     2.000000            2
2_q32.1              2     2.000000            2     2.000000            2
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2_q32.3              2     2.000000            2     2.000000            2
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11_q23.2      2.000000            2     2.000000     2.000000     2.000000
11_q23.3      2.849598            2     2.000000     2.000000     2.000000
11_q24.1      4.000000            2     2.000000     2.000000     2.000000
11_q24.2      4.000000            2     2.000000     2.000000     2.000000
11_q24.3      4.000000            2     2.000000     2.000000     2.000000
11_q25        4.000000            2     2.000000     2.000000     2.000000
          TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2890 TCGA-AB-2892 TCGA-AB-2893
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
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9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
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10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2903 TCGA-AB-2904
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          TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2907 TCGA-AB-2908 TCGA-AB-2909
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          TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2940
1_p36.32             2     2.000000     2.000000    1.3761760     2.000000
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1_q25.3              2     2.000000     2.000000    2.0000000     2.815968
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1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
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          TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966
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1_p36.22             2            2            2            2            2
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1_p34.3              2            2            2            2            2
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1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
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1_q32.3              2            2            2            2            2
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1_q42.3              2            2            2            2            2
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3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
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3_p11.1              2            2            2            2            2
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3_q13.2              2            2            2            2            2
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3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
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3_q26.32             2            2            2            2            2
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3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
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4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971
1_p36.32      2.000000            2            2            2     2.000000
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2_p15         2.000000            2            2            2     2.000000
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2_q11.1       2.000000            2            2            2     2.000000
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11_q25        2.000000            2            2            2     2.000000
          TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2975 TCGA-AB-2976
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993
1_p36.32             2            2     2.000000            2            2
1_p36.31             2            2     2.000000            2            2
1_p36.23             2            2     2.000000            2            2
1_p36.22             2            2     2.000000            2            2
1_p36.21             2            2     2.000000            2            2
1_p36.13             2            2     2.000000            2            2
1_p36.12             2            2     2.000000            2            2
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1_p35.3              2            2     2.000000            2            2
1_p35.2              2            2     2.000000            2            2
1_p35.1              2            2     2.000000            2            2
1_p34.3              2            2     2.000000            2            2
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1_p34.1              2            2     2.000000            2            2
1_p33                2            2     2.000000            2            2
1_p32.3              2            2     2.000000            2            2
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1_p32.1              2            2     2.000000            2            2
1_p31.3              2            2     2.000000            2            2
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1_p22.3              2            2     2.000000            2            2
1_p22.2              2            2     2.000000            2            2
1_p22.1              2            2     2.000000            2            2
1_p21.3              2            2     2.000000            2            2
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1_p21.1              2            2     2.000000            2            2
1_p13.3              2            2     2.000000            2            2
1_p13.2              2            2     2.000000            2            2
1_p13.1              2            2     2.000000            2            2
1_p12                2            2     2.000000            2            2
1_p11.2              2            2     2.000000            2            2
1_p11.1              2            2     2.000000            2            2
1_q11                2            2     2.000000            2            2
1_q12                2            2     2.000000            2            2
1_q21.1              2            2     2.000000            2            2
1_q21.2              2            2     2.000000            2            2
1_q21.3              2            2     2.000000            2            2
1_q22                2            2     2.000000            2            2
1_q23.1              2            2     2.000000            2            2
1_q23.2              2            2     2.000000            2            2
1_q23.3              2            2     2.000000            2            2
1_q24.1              2            2     2.000000            2            2
1_q24.2              2            2     2.000000            2            2
1_q24.3              2            2     2.000000            2            2
1_q25.1              2            2     2.000000            2            2
1_q25.2              2            2     2.000000            2            2
1_q25.3              2            2     2.000000            2            2
1_q31.1              2            2     2.000000            2            2
1_q31.2              2            2     2.000000            2            2
1_q31.3              2            2     2.000000            2            2
1_q32.1              2            2     2.000000            2            2
1_q32.2              2            2     2.000000            2            2
1_q32.3              2            2     2.000000            2            2
1_q41                2            2     2.000000            2            2
1_q42.11             2            2     2.000000            2            2
1_q42.12             2            2     2.000000            2            2
1_q42.13             2            2     2.000000            2            2
1_q42.2              2            2     2.000000            2            2
1_q42.3              2            2     2.000000            2            2
1_q43                2            2     2.000000            2            2
1_q44                2            2     2.000000            2            2
2_p25.3              2            2     2.000000            2            2
2_p25.2              2            2     2.000000            2            2
2_p25.1              2            2     2.000000            2            2
2_p24.3              2            2     2.000000            2            2
2_p24.2              2            2     2.000000            2            2
2_p24.1              2            2     2.000000            2            2
2_p23.3              2            2     2.000000            2            2
2_p23.2              2            2     2.000000            2            2
2_p23.1              2            2     2.000000            2            2
2_p22.3              2            2     2.000000            2            2
2_p22.2              2            2     2.000000            2            2
2_p22.1              2            2     2.000000            2            2
2_p21                2            2     2.000000            2            2
2_p16.3              2            2     2.000000            2            2
2_p16.2              2            2     2.000000            2            2
2_p16.1              2            2     2.000000            2            2
2_p15                2            2     2.000000            2            2
2_p14                2            2     2.000000            2            2
2_p13.3              2            2     2.000000            2            2
2_p13.2              2            2     2.000000            2            2
2_p13.1              2            2     2.000000            2            2
2_p12                2            2     2.000000            2            2
2_p11.2              2            2     2.000000            2            2
2_p11.1              2            2     2.000000            2            2
2_q11.1              2            2     2.000000            2            2
2_q11.2              2            2     2.000000            2            2
2_q12.1              2            2     2.000000            2            2
2_q12.2              2            2     2.000000            2            2
2_q12.3              2            2     2.000000            2            2
2_q13                2            2     2.000000            2            2
2_q14.1              2            2     2.000000            2            2
2_q14.2              2            2     2.000000            2            2
2_q14.3              2            2     2.000000            2            2
2_q21.1              2            2     2.000000            2            2
2_q21.2              2            2     2.000000            2            2
2_q21.3              2            2     2.000000            2            2
2_q22.1              2            2     2.000000            2            2
2_q22.2              2            2     2.000000            2            2
2_q22.3              2            2     2.000000            2            2
2_q23.1              2            2     2.000000            2            2
2_q23.2              2            2     2.000000            2            2
2_q23.3              2            2     2.000000            2            2
2_q24.1              2            2     2.000000            2            2
2_q24.2              2            2     2.000000            2            2
2_q24.3              2            2     2.000000            2            2
2_q31.1              2            2     2.000000            2            2
2_q31.2              2            2     2.000000            2            2
2_q31.3              2            2     2.000000            2            2
2_q32.1              2            2     2.000000            2            2
2_q32.2              2            2     2.000000            2            2
2_q32.3              2            2     2.000000            2            2
2_q33.1              2            2     2.000000            2            2
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2_q33.3              2            2     2.000000            2            2
2_q34                2            2     2.000000            2            2
2_q35                2            2     2.000000            2            2
2_q36.1              2            2     2.000000            2            2
2_q36.2              2            2     2.000000            2            2
2_q36.3              2            2     2.000000            2            2
2_q37.1              2            2     2.000000            2            2
2_q37.2              2            2     2.000000            2            2
2_q37.3              2            2     2.000000            2            2
3_p26.3              2            2     2.000000            2            2
3_p26.2              2            2     2.000000            2            2
3_p26.1              2            2     2.000000            2            2
3_p25.3              2            2     2.000000            2            2
3_p25.2              2            2     2.000000            2            2
3_p25.1              2            2     2.000000            2            2
3_p24.3              2            2     2.000000            2            2
3_p24.2              2            2     2.000000            2            2
3_p24.1              2            2     2.000000            2            2
3_p23                2            2     2.000000            2            2
3_p22.3              2            2     2.000000            2            2
3_p22.2              2            2     2.000000            2            2
3_p22.1              2            2     2.000000            2            2
3_p21.33             2            2     2.000000            2            2
3_p21.32             2            2     2.000000            2            2
3_p21.31             2            2     2.000000            2            2
3_p21.2              2            2     2.000000            2            2
3_p21.1              2            2     2.000000            2            2
3_p14.3              2            2     2.000000            2            2
3_p14.2              2            2     2.000000            2            2
3_p14.1              2            2     2.000000            2            2
3_p13                2            2     2.000000            2            2
3_p12.3              2            2     2.000000            2            2
3_p12.2              2            2     2.000000            2            2
3_p12.1              2            2     2.000000            2            2
3_p11.2              2            2     2.000000            2            2
3_p11.1              2            2     2.000000            2            2
3_q11.1              2            2     2.000000            2            2
3_q11.2              2            2     2.000000            2            2
3_q12.1              2            2     2.000000            2            2
3_q12.2              2            2     2.000000            2            2
3_q12.3              2            2     2.000000            2            2
3_q13.11             2            2     2.000000            2            2
3_q13.12             2            2     2.000000            2            2
3_q13.13             2            2     2.000000            2            2
3_q13.2              2            2     2.000000            2            2
3_q13.31             2            2     2.000000            2            2
3_q13.32             2            2     2.000000            2            2
3_q13.33             2            2     2.000000            2            2
3_q21.1              2            2     2.000000            2            2
3_q21.2              2            2     2.000000            2            2
3_q21.3              2            2     2.000000            2            2
3_q22.1              2            2     2.000000            2            2
3_q22.2              2            2     2.000000            2            2
3_q22.3              2            2     2.000000            2            2
3_q23                2            2     2.000000            2            2
3_q24                2            2     2.000000            2            2
3_q25.1              2            2     2.000000            2            2
3_q25.2              2            2     2.000000            2            2
3_q25.31             2            2     2.000000            2            2
3_q25.32             2            2     2.000000            2            2
3_q25.33             2            2     2.000000            2            2
3_q26.1              2            2     2.000000            2            2
3_q26.2              2            2     2.000000            2            2
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          TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2997 TCGA-AB-2998
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2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
10_q22.1             2            2            2            2            2
10_q22.2             2            2            2            2            2
10_q22.3             2            2            2            2            2
10_q23.1             2            2            2            2            2
10_q23.2             2            2            2            2            2
10_q23.31            2            2            2            2            2
10_q23.32            2            2            2            2            2
10_q23.33            2            2            2            2            2
10_q24.1             2            2            2            2            2
10_q24.2             2            2            2            2            2
10_q24.31            2            2            2            2            2
10_q24.32            2            2            2            2            2
10_q24.33            2            2            2            2            2
10_q25.1             2            2            2            2            2
10_q25.2             2            2            2            2            2
10_q25.3             2            2            2            2            2
10_q26.11            2            2            2            2            2
10_q26.12            2            2            2            2            2
10_q26.13            2            2            2            2            2
10_q26.2             2            2            2            2            2
10_q26.3             2            2            2            2            2
11_p15.5             2            2            2            2            2
11_p15.4             2            2            2            2            2
11_p15.3             2            2            2            2            2
11_p15.2             2            2            2            2            2
11_p15.1             2            2            2            2            2
11_p14.3             2            2            2            2            2
11_p14.2             2            2            2            2            2
11_p14.1             2            2            2            2            2
11_p13               2            2            2            2            2
11_p12               2            2            2            2            2
11_p11.2             2            2            2            2            2
11_p11.12            2            2            2            2            2
11_p11.11            2            2            2            2            2
11_q11               2            2            2            2            2
11_q12.1             2            2            2            2            2
11_q12.2             2            2            2            2            2
11_q12.3             2            2            2            2            2
11_q13.1             2            2            2            2            2
11_q13.2             2            2            2            2            2
11_q13.3             2            2            2            2            2
11_q13.4             2            2            2            2            2
11_q13.5             2            2            2            2            2
11_q14.1             2            2            2            2            2
11_q14.2             2            2            2            2            2
11_q14.3             2            2            2            2            2
11_q21               2            2            2            2            2
11_q22.1             2            2            2            2            2
11_q22.2             2            2            2            2            2
11_q22.3             2            2            2            2            2
11_q23.1             2            2            2            2            2
11_q23.2             2            2            2            2            2
11_q23.3             2            2            2            2            2
11_q24.1             2            2            2            2            2
11_q24.2             2            2            2            2            2
11_q24.3             2            2            2            2            2
11_q25               2            2            2            2            2
          TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005
1_p36.32             2            2            2            2            2
1_p36.31             2            2            2            2            2
1_p36.23             2            2            2            2            2
1_p36.22             2            2            2            2            2
1_p36.21             2            2            2            2            2
1_p36.13             2            2            2            2            2
1_p36.12             2            2            2            2            2
1_p36.11             2            2            2            2            2
1_p35.3              2            2            2            2            2
1_p35.2              2            2            2            2            2
1_p35.1              2            2            2            2            2
1_p34.3              2            2            2            2            2
1_p34.2              2            2            2            2            2
1_p34.1              2            2            2            2            2
1_p33                2            2            2            2            2
1_p32.3              2            2            2            2            2
1_p32.2              2            2            2            2            2
1_p32.1              2            2            2            2            2
1_p31.3              2            2            2            2            2
1_p31.2              2            2            2            2            2
1_p31.1              2            2            2            2            2
1_p22.3              2            2            2            2            2
1_p22.2              2            2            2            2            2
1_p22.1              2            2            2            2            2
1_p21.3              2            2            2            2            2
1_p21.2              2            2            2            2            2
1_p21.1              2            2            2            2            2
1_p13.3              2            2            2            2            2
1_p13.2              2            2            2            2            2
1_p13.1              2            2            2            2            2
1_p12                2            2            2            2            2
1_p11.2              2            2            2            2            2
1_p11.1              2            2            2            2            2
1_q11                2            2            2            2            2
1_q12                2            2            2            2            2
1_q21.1              2            2            2            2            2
1_q21.2              2            2            2            2            2
1_q21.3              2            2            2            2            2
1_q22                2            2            2            2            2
1_q23.1              2            2            2            2            2
1_q23.2              2            2            2            2            2
1_q23.3              2            2            2            2            2
1_q24.1              2            2            2            2            2
1_q24.2              2            2            2            2            2
1_q24.3              2            2            2            2            2
1_q25.1              2            2            2            2            2
1_q25.2              2            2            2            2            2
1_q25.3              2            2            2            2            2
1_q31.1              2            2            2            2            2
1_q31.2              2            2            2            2            2
1_q31.3              2            2            2            2            2
1_q32.1              2            2            2            2            2
1_q32.2              2            2            2            2            2
1_q32.3              2            2            2            2            2
1_q41                2            2            2            2            2
1_q42.11             2            2            2            2            2
1_q42.12             2            2            2            2            2
1_q42.13             2            2            2            2            2
1_q42.2              2            2            2            2            2
1_q42.3              2            2            2            2            2
1_q43                2            2            2            2            2
1_q44                2            2            2            2            2
2_p25.3              2            2            2            2            2
2_p25.2              2            2            2            2            2
2_p25.1              2            2            2            2            2
2_p24.3              2            2            2            2            2
2_p24.2              2            2            2            2            2
2_p24.1              2            2            2            2            2
2_p23.3              2            2            2            2            2
2_p23.2              2            2            2            2            2
2_p23.1              2            2            2            2            2
2_p22.3              2            2            2            2            2
2_p22.2              2            2            2            2            2
2_p22.1              2            2            2            2            2
2_p21                2            2            2            2            2
2_p16.3              2            2            2            2            2
2_p16.2              2            2            2            2            2
2_p16.1              2            2            2            2            2
2_p15                2            2            2            2            2
2_p14                2            2            2            2            2
2_p13.3              2            2            2            2            2
2_p13.2              2            2            2            2            2
2_p13.1              2            2            2            2            2
2_p12                2            2            2            2            2
2_p11.2              2            2            2            2            2
2_p11.1              2            2            2            2            2
2_q11.1              2            2            2            2            2
2_q11.2              2            2            2            2            2
2_q12.1              2            2            2            2            2
2_q12.2              2            2            2            2            2
2_q12.3              2            2            2            2            2
2_q13                2            2            2            2            2
2_q14.1              2            2            2            2            2
2_q14.2              2            2            2            2            2
2_q14.3              2            2            2            2            2
2_q21.1              2            2            2            2            2
2_q21.2              2            2            2            2            2
2_q21.3              2            2            2            2            2
2_q22.1              2            2            2            2            2
2_q22.2              2            2            2            2            2
2_q22.3              2            2            2            2            2
2_q23.1              2            2            2            2            2
2_q23.2              2            2            2            2            2
2_q23.3              2            2            2            2            2
2_q24.1              2            2            2            2            2
2_q24.2              2            2            2            2            2
2_q24.3              2            2            2            2            2
2_q31.1              2            2            2            2            2
2_q31.2              2            2            2            2            2
2_q31.3              2            2            2            2            2
2_q32.1              2            2            2            2            2
2_q32.2              2            2            2            2            2
2_q32.3              2            2            2            2            2
2_q33.1              2            2            2            2            2
2_q33.2              2            2            2            2            2
2_q33.3              2            2            2            2            2
2_q34                2            2            2            2            2
2_q35                2            2            2            2            2
2_q36.1              2            2            2            2            2
2_q36.2              2            2            2            2            2
2_q36.3              2            2            2            2            2
2_q37.1              2            2            2            2            2
2_q37.2              2            2            2            2            2
2_q37.3              2            2            2            2            2
3_p26.3              2            2            2            2            2
3_p26.2              2            2            2            2            2
3_p26.1              2            2            2            2            2
3_p25.3              2            2            2            2            2
3_p25.2              2            2            2            2            2
3_p25.1              2            2            2            2            2
3_p24.3              2            2            2            2            2
3_p24.2              2            2            2            2            2
3_p24.1              2            2            2            2            2
3_p23                2            2            2            2            2
3_p22.3              2            2            2            2            2
3_p22.2              2            2            2            2            2
3_p22.1              2            2            2            2            2
3_p21.33             2            2            2            2            2
3_p21.32             2            2            2            2            2
3_p21.31             2            2            2            2            2
3_p21.2              2            2            2            2            2
3_p21.1              2            2            2            2            2
3_p14.3              2            2            2            2            2
3_p14.2              2            2            2            2            2
3_p14.1              2            2            2            2            2
3_p13                2            2            2            2            2
3_p12.3              2            2            2            2            2
3_p12.2              2            2            2            2            2
3_p12.1              2            2            2            2            2
3_p11.2              2            2            2            2            2
3_p11.1              2            2            2            2            2
3_q11.1              2            2            2            2            2
3_q11.2              2            2            2            2            2
3_q12.1              2            2            2            2            2
3_q12.2              2            2            2            2            2
3_q12.3              2            2            2            2            2
3_q13.11             2            2            2            2            2
3_q13.12             2            2            2            2            2
3_q13.13             2            2            2            2            2
3_q13.2              2            2            2            2            2
3_q13.31             2            2            2            2            2
3_q13.32             2            2            2            2            2
3_q13.33             2            2            2            2            2
3_q21.1              2            2            2            2            2
3_q21.2              2            2            2            2            2
3_q21.3              2            2            2            2            2
3_q22.1              2            2            2            2            2
3_q22.2              2            2            2            2            2
3_q22.3              2            2            2            2            2
3_q23                2            2            2            2            2
3_q24                2            2            2            2            2
3_q25.1              2            2            2            2            2
3_q25.2              2            2            2            2            2
3_q25.31             2            2            2            2            2
3_q25.32             2            2            2            2            2
3_q25.33             2            2            2            2            2
3_q26.1              2            2            2            2            2
3_q26.2              2            2            2            2            2
3_q26.31             2            2            2            2            2
3_q26.32             2            2            2            2            2
3_q26.33             2            2            2            2            2
3_q27.1              2            2            2            2            2
3_q27.2              2            2            2            2            2
3_q27.3              2            2            2            2            2
3_q28                2            2            2            2            2
3_q29                2            2            2            2            2
4_p16.3              2            2            2            2            2
4_p16.2              2            2            2            2            2
4_p16.1              2            2            2            2            2
4_p15.33             2            2            2            2            2
4_p15.32             2            2            2            2            2
4_p15.31             2            2            2            2            2
4_p15.2              2            2            2            2            2
4_p15.1              2            2            2            2            2
4_p14                2            2            2            2            2
4_p13                2            2            2            2            2
4_p12                2            2            2            2            2
4_p11                2            2            2            2            2
4_q11                2            2            2            2            2
4_q12                2            2            2            2            2
4_q13.1              2            2            2            2            2
4_q13.2              2            2            2            2            2
4_q13.3              2            2            2            2            2
4_q21.1              2            2            2            2            2
4_q21.21             2            2            2            2            2
4_q21.22             2            2            2            2            2
4_q21.23             2            2            2            2            2
4_q21.3              2            2            2            2            2
4_q22.1              2            2            2            2            2
4_q22.2              2            2            2            2            2
4_q22.3              2            2            2            2            2
4_q23                2            2            2            2            2
4_q24                2            2            2            2            2
4_q25                2            2            2            2            2
4_q26                2            2            2            2            2
4_q27                2            2            2            2            2
4_q28.1              2            2            2            2            2
4_q28.2              2            2            2            2            2
4_q28.3              2            2            2            2            2
4_q31.1              2            2            2            2            2
4_q31.21             2            2            2            2            2
4_q31.22             2            2            2            2            2
4_q31.23             2            2            2            2            2
4_q31.3              2            2            2            2            2
4_q32.1              2            2            2            2            2
4_q32.2              2            2            2            2            2
4_q32.3              2            2            2            2            2
4_q33                2            2            2            2            2
4_q34.1              2            2            2            2            2
4_q34.2              2            2            2            2            2
4_q34.3              2            2            2            2            2
4_q35.1              2            2            2            2            2
4_q35.2              2            2            2            2            2
5_p15.33             2            2            2            2            2
5_p15.32             2            2            2            2            2
5_p15.31             2            2            2            2            2
5_p15.2              2            2            2            2            2
5_p15.1              2            2            2            2            2
5_p14.3              2            2            2            2            2
5_p14.2              2            2            2            2            2
5_p14.1              2            2            2            2            2
5_p13.3              2            2            2            2            2
5_p13.2              2            2            2            2            2
5_p13.1              2            2            2            2            2
5_p12                2            2            2            2            2
5_q11.1              2            2            2            2            2
5_q11.2              2            2            2            2            2
5_q12.1              2            2            2            2            2
5_q12.2              2            2            2            2            2
5_q12.3              2            2            2            2            2
5_q13.1              2            2            2            2            2
5_q13.2              2            2            2            2            2
5_q13.3              2            2            2            2            2
5_q14.1              2            2            2            2            2
5_q14.2              2            2            2            2            2
5_q14.3              2            2            2            2            2
5_q15                2            2            2            2            2
5_q21.1              2            2            2            2            2
5_q21.2              2            2            2            2            2
5_q21.3              2            2            2            2            2
5_q22.1              2            2            2            2            2
5_q22.2              2            2            2            2            2
5_q22.3              2            2            2            2            2
5_q23.1              2            2            2            2            2
5_q23.2              2            2            2            2            2
5_q23.3              2            2            2            2            2
5_q31.1              2            2            2            2            2
5_q31.2              2            2            2            2            2
5_q31.3              2            2            2            2            2
5_q32                2            2            2            2            2
5_q33.1              2            2            2            2            2
5_q33.2              2            2            2            2            2
5_q33.3              2            2            2            2            2
5_q34                2            2            2            2            2
5_q35.1              2            2            2            2            2
5_q35.2              2            2            2            2            2
5_q35.3              2            2            2            2            2
6_p25.3              2            2            2            2            2
6_p25.2              2            2            2            2            2
6_p25.1              2            2            2            2            2
6_p24.3              2            2            2            2            2
6_p24.2              2            2            2            2            2
6_p24.1              2            2            2            2            2
6_p23                2            2            2            2            2
6_p22.3              2            2            2            2            2
6_p22.2              2            2            2            2            2
6_p22.1              2            2            2            2            2
6_p21.33             2            2            2            2            2
6_p21.32             2            2            2            2            2
6_p21.31             2            2            2            2            2
6_p21.2              2            2            2            2            2
6_p21.1              2            2            2            2            2
6_p12.3              2            2            2            2            2
6_p12.2              2            2            2            2            2
6_p12.1              2            2            2            2            2
6_p11.2              2            2            2            2            2
6_p11.1              2            2            2            2            2
6_q11.1              2            2            2            2            2
6_q11.2              2            2            2            2            2
6_q12                2            2            2            2            2
6_q13                2            2            2            2            2
6_q14.1              2            2            2            2            2
6_q14.2              2            2            2            2            2
6_q14.3              2            2            2            2            2
6_q15                2            2            2            2            2
6_q16.1              2            2            2            2            2
6_q16.2              2            2            2            2            2
6_q16.3              2            2            2            2            2
6_q21                2            2            2            2            2
6_q22.1              2            2            2            2            2
6_q22.2              2            2            2            2            2
6_q22.31             2            2            2            2            2
6_q22.32             2            2            2            2            2
6_q22.33             2            2            2            2            2
6_q23.1              2            2            2            2            2
6_q23.2              2            2            2            2            2
6_q23.3              2            2            2            2            2
6_q24.1              2            2            2            2            2
6_q24.2              2            2            2            2            2
6_q24.3              2            2            2            2            2
6_q25.1              2            2            2            2            2
6_q25.2              2            2            2            2            2
6_q25.3              2            2            2            2            2
6_q26                2            2            2            2            2
6_q27                2            2            2            2            2
7_p22.3              2            2            2            2            2
7_p22.2              2            2            2            2            2
7_p22.1              2            2            2            2            2
7_p21.3              2            2            2            2            2
7_p21.2              2            2            2            2            2
7_p21.1              2            2            2            2            2
7_p15.3              2            2            2            2            2
7_p15.2              2            2            2            2            2
7_p15.1              2            2            2            2            2
7_p14.3              2            2            2            2            2
7_p14.2              2            2            2            2            2
7_p14.1              2            2            2            2            2
7_p13                2            2            2            2            2
7_p12.3              2            2            2            2            2
7_p12.2              2            2            2            2            2
7_p12.1              2            2            2            2            2
7_p11.2              2            2            2            2            2
7_p11.1              2            2            2            2            2
7_q11.1              2            2            2            2            2
7_q11.21             2            2            2            2            2
7_q11.22             2            2            2            2            2
7_q11.23             2            2            2            2            2
7_q21.11             2            2            2            2            2
7_q21.12             2            2            2            2            2
7_q21.13             2            2            2            2            2
7_q21.2              2            2            2            2            2
7_q21.3              2            2            2            2            2
7_q22.1              2            2            2            2            2
7_q22.2              2            2            2            2            2
7_q22.3              2            2            2            2            2
7_q31.1              2            2            2            2            2
7_q31.2              2            2            2            2            2
7_q31.31             2            2            2            2            2
7_q31.32             2            2            2            2            2
7_q31.33             2            2            2            2            2
7_q32.1              2            2            2            2            2
7_q32.2              2            2            2            2            2
7_q32.3              2            2            2            2            2
7_q33                2            2            2            2            2
7_q34                2            2            2            2            2
7_q35                2            2            2            2            2
7_q36.1              2            2            2            2            2
7_q36.2              2            2            2            2            2
7_q36.3              2            2            2            2            2
8_p23.3              2            2            2            2            2
8_p23.2              2            2            2            2            2
8_p23.1              2            2            2            2            2
8_p22                2            2            2            2            2
8_p21.3              2            2            2            2            2
8_p21.2              2            2            2            2            2
8_p21.1              2            2            2            2            2
8_p12                2            2            2            2            2
8_p11.23             2            2            2            2            2
8_p11.22             2            2            2            2            2
8_p11.21             2            2            2            2            2
8_q11.1              2            2            2            2            2
8_q11.21             2            2            2            2            2
8_q11.22             2            2            2            2            2
8_q11.23             2            2            2            2            2
8_q12.1              2            2            2            2            2
8_q12.2              2            2            2            2            2
8_q12.3              2            2            2            2            2
8_q13.1              2            2            2            2            2
8_q13.2              2            2            2            2            2
8_q13.3              2            2            2            2            2
8_q21.11             2            2            2            2            2
8_q21.12             2            2            2            2            2
8_q21.13             2            2            2            2            2
8_q21.2              2            2            2            2            2
8_q21.3              2            2            2            2            2
8_q22.1              2            2            2            2            2
8_q22.2              2            2            2            2            2
8_q22.3              2            2            2            2            2
8_q23.1              2            2            2            2            2
8_q23.2              2            2            2            2            2
8_q23.3              2            2            2            2            2
8_q24.11             2            2            2            2            2
8_q24.12             2            2            2            2            2
8_q24.13             2            2            2            2            2
8_q24.21             2            2            2            2            2
8_q24.22             2            2            2            2            2
8_q24.23             2            2            2            2            2
8_q24.3              2            2            2            2            2
9_p24.3              2            2            2            2            2
9_p24.2              2            2            2            2            2
9_p24.1              2            2            2            2            2
9_p23                2            2            2            2            2
9_p22.3              2            2            2            2            2
9_p22.2              2            2            2            2            2
9_p22.1              2            2            2            2            2
9_p21.3              2            2            2            2            2
9_p21.2              2            2            2            2            2
9_p21.1              2            2            2            2            2
9_p13.3              2            2            2            2            2
9_p13.2              2            2            2            2            2
9_p13.1              2            2            2            2            2
9_q21.11             2            2            2            2            2
9_q21.12             2            2            2            2            2
9_q21.13             2            2            2            2            2
9_q21.2              2            2            2            2            2
9_q21.31             2            2            2            2            2
9_q21.32             2            2            2            2            2
9_q21.33             2            2            2            2            2
9_q22.1              2            2            2            2            2
9_q22.2              2            2            2            2            2
9_q22.31             2            2            2            2            2
9_q22.32             2            2            2            2            2
9_q22.33             2            2            2            2            2
9_q31.1              2            2            2            2            2
9_q31.2              2            2            2            2            2
9_q31.3              2            2            2            2            2
9_q32                2            2            2            2            2
9_q33.1              2            2            2            2            2
9_q33.2              2            2            2            2            2
9_q33.3              2            2            2            2            2
9_q34.11             2            2            2            2            2
9_q34.12             2            2            2            2            2
9_q34.13             2            2            2            2            2
9_q34.2              2            2            2            2            2
9_q34.3              2            2            2            2            2
10_p15.3             2            2            2            2            2
10_p15.2             2            2            2            2            2
10_p15.1             2            2            2            2            2
10_p14               2            2            2            2            2
10_p13               2            2            2            2            2
10_p12.33            2            2            2            2            2
10_p12.32            2            2            2            2            2
10_p12.31            2            2            2            2            2
10_p12.2             2            2            2            2            2
10_p12.1             2            2            2            2            2
10_p11.23            2            2            2            2            2
10_p11.22            2            2            2            2            2
10_p11.21            2            2            2            2            2
10_p11.1             2            2            2            2            2
10_q11.1             2            2            2            2            2
10_q11.21            2            2            2            2            2
10_q11.22            2            2            2            2            2
10_q11.23            2            2            2            2            2
10_q21.1             2            2            2            2            2
10_q21.2             2            2            2            2            2
10_q21.3             2            2            2            2            2
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10_q23.31            2            2            2            2            2
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6_q11.2              2     2.000000            2      2.00000     2.000000
6_q12                2     2.000000            2      2.00000     2.000000
6_q13                2     2.000000            2      2.00000     2.000000
6_q14.1              2     2.000000            2      2.00000     2.000000
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6_q15                2     2.000000            2      2.00000     2.000000
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6_q21                2     2.000000            2      2.00000     2.000000
6_q22.1              2     2.000000            2      2.00000     2.000000
6_q22.2              2     2.000000            2      2.00000     2.000000
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6_q25.3              2     2.000000            2      2.00000     2.000000
6_q26                2     2.000000            2      2.00000     2.000000
6_q27                2     2.000000            2      2.00000     2.000000
7_p22.3              2     2.000000            2      2.00000     2.000000
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7_p15.3              2     2.000000            2      2.00000     2.000000
7_p15.2              2     2.000000            2      2.00000     2.000000
7_p15.1              2     2.000000            2      2.00000     2.000000
7_p14.3              2     2.000000            2      2.00000     2.000000
7_p14.2              2     2.000000            2      2.00000     2.000000
7_p14.1              2     2.000000            2      2.00000     2.000000
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7_p12.3              2     2.000000            2      2.00000     2.000000
7_p12.2              2     2.000000            2      2.00000     2.000000
7_p12.1              2     2.000000            2      2.00000     2.000000
7_p11.2              2     2.000000            2      2.00000     2.000000
7_p11.1              2     2.000000            2      2.00000     2.000000
7_q11.1              2     2.000000            2      2.00000     2.000000
7_q11.21             2     2.000000            2      2.00000     2.000000
7_q11.22             2     2.000000            2      2.00000     2.000000
7_q11.23             2     2.000000            2      2.00000     2.000000
7_q21.11             2     2.000000            2      2.00000     2.000000
7_q21.12             2     2.000000            2      2.00000     2.000000
7_q21.13             2     2.000000            2      2.00000     2.000000
7_q21.2              2     2.000000            2      2.00000     2.000000
7_q21.3              2     2.000000            2      2.00000     2.000000
7_q22.1              2     2.000000            2      2.00000     2.000000
7_q22.2              2     2.000000            2      2.00000     2.000000
7_q22.3              2     2.000000            2      2.00000     2.000000
7_q31.1              2     1.526670            2      2.00000     2.000000
7_q31.2              2     1.165361            2      2.00000     2.000000
7_q31.31             2     1.165361            2      2.00000     2.000000
7_q31.32             2     1.165361            2      2.00000     2.000000
7_q31.33             2     1.165361            2      2.00000     2.000000
7_q32.1              2     1.165361            2      2.00000     2.000000
7_q32.2              2     1.165361            2      2.00000     2.000000
7_q32.3              2     1.165361            2      2.00000     2.000000
7_q33                2     1.165361            2      2.00000     2.000000
7_q34                2     1.165361            2      2.00000     2.000000
7_q35                2     1.165361            2      2.00000     2.000000
7_q36.1              2     1.165361            2      2.00000     2.000000
7_q36.2              2     1.165361            2      2.00000     2.000000
7_q36.3              2     1.165361            2      2.00000     2.000000
8_p23.3              2     2.000000            2      2.00000     2.000000
8_p23.2              2     2.000000            2      2.00000     2.000000
8_p23.1              2     2.000000            2      2.00000     2.000000
8_p22                2     2.000000            2      2.00000     2.000000
8_p21.3              2     2.000000            2      2.00000     2.000000
8_p21.2              2     2.000000            2      2.00000     2.000000
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8_p11.23             2     2.000000            2      2.00000     2.000000
8_p11.22             2     2.000000            2      2.00000     2.000000
8_p11.21             2     2.000000            2      2.00000     2.000000
8_q11.1              2     2.000000            2      2.00000     2.000000
8_q11.21             2     2.000000            2      2.00000     2.000000
8_q11.22             2     2.000000            2      2.00000     2.000000
8_q11.23             2     2.000000            2      2.00000     2.000000
8_q12.1              2     2.000000            2      2.00000     2.000000
8_q12.2              2     2.000000            2      2.00000     2.000000
8_q12.3              2     2.000000            2      2.00000     2.000000
8_q13.1              2     2.000000            2      2.00000     2.000000
8_q13.2              2     2.000000            2      2.00000     2.000000
8_q13.3              2     2.000000            2      2.00000     2.000000
8_q21.11             2     2.000000            2      2.00000     2.000000
8_q21.12             2     2.000000            2      2.00000     2.000000
8_q21.13             2     2.000000            2      2.00000     2.000000
8_q21.2              2     2.000000            2      2.00000     2.000000
8_q21.3              2     2.000000            2      2.00000     2.000000
8_q22.1              2     2.000000            2      2.00000     2.000000
8_q22.2              2     2.000000            2      2.00000     2.000000
8_q22.3              2     2.000000            2      2.00000     2.000000
8_q23.1              2     2.000000            2      2.00000     2.000000
8_q23.2              2     2.000000            2      2.00000     2.000000
8_q23.3              2     2.000000            2      2.00000     2.000000
8_q24.11             2     2.000000            2      2.00000     2.000000
8_q24.12             2     2.000000            2      2.00000     2.000000
8_q24.13             2     2.000000            2      2.00000     2.000000
8_q24.21             2     2.000000            2      2.00000     2.000000
8_q24.22             2     2.000000            2      2.00000     2.000000
8_q24.23             2     2.000000            2      2.00000     2.000000
8_q24.3              2     2.000000            2      2.00000     2.000000
9_p24.3              2     2.000000            2      2.00000     2.000000
9_p24.2              2     2.000000            2      2.00000     2.000000
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9_p22.3              2     2.000000            2      2.00000     2.000000
9_p22.2              2     2.000000            2      2.00000     2.000000
9_p22.1              2     2.000000            2      2.00000     2.000000
9_p21.3              2     2.000000            2      2.00000     2.000000
9_p21.2              2     2.000000            2      2.00000     2.000000
9_p21.1              2     2.000000            2      2.00000     2.000000
9_p13.3              2     2.000000            2      2.00000     2.000000
9_p13.2              2     2.000000            2      2.00000     2.000000
9_p13.1              2     2.000000            2      2.00000     2.000000
9_q21.11             2     2.000000            2      2.00000     2.000000
9_q21.12             2     2.000000            2      2.00000     2.000000
9_q21.13             2     2.000000            2      2.00000     2.000000
9_q21.2              2     2.000000            2      2.00000     2.000000
9_q21.31             2     2.000000            2      2.00000     2.000000
9_q21.32             2     2.000000            2      2.00000     2.000000
9_q21.33             2     2.000000            2      2.00000     2.000000
9_q22.1              2     2.000000            2      2.00000     2.000000
9_q22.2              2     2.000000            2      2.00000     2.000000
9_q22.31             2     2.000000            2      2.00000     2.000000
9_q22.32             2     2.000000            2      2.00000     2.000000
9_q22.33             2     2.000000            2      2.00000     2.000000
9_q31.1              2     2.000000            2      2.00000     2.000000
9_q31.2              2     2.000000            2      2.00000     2.000000
9_q31.3              2     2.000000            2      2.00000     2.000000
9_q32                2     2.000000            2      2.00000     2.000000
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9_q33.3              2     2.000000            2      2.00000     2.000000
9_q34.11             2     2.000000            2      2.00000     2.000000
9_q34.12             2     2.000000            2      2.00000     2.000000
9_q34.13             2     2.000000            2      2.00000     2.000000
9_q34.2              2     2.000000            2      2.00000     2.000000
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10_p15.3             2     2.000000            2      2.00000     2.000000
10_p15.2             2     2.000000            2      2.00000     2.000000
10_p15.1             2     2.000000            2      2.00000     2.000000
10_p14               2     2.000000            2      2.00000     2.000000
10_p13               2     2.000000            2      2.00000     2.000000
10_p12.33            2     2.000000            2      2.00000     2.000000
10_p12.32            2     2.000000            2      2.00000     2.000000
10_p12.31            2     2.000000            2      2.00000     2.000000
10_p12.2             2     2.000000            2      2.00000     2.000000
10_p12.1             2     2.000000            2      2.00000     2.000000
10_p11.23            2     2.000000            2      2.00000     2.000000
10_p11.22            2     2.000000            2      2.00000     2.000000
10_p11.21            2     2.000000            2      2.00000     2.000000
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10_q11.1             2     2.000000            2      2.00000     2.000000
10_q11.21            2     2.000000            2      2.00000     2.000000
10_q11.22            2     2.579822            2      2.00000     2.000000
10_q11.23            2     2.579822            2      2.00000     2.000000
10_q21.1             2     2.000000            2      2.00000     2.000000
10_q21.2             2     2.000000            2      2.00000     2.000000
10_q21.3             2     2.000000            2      2.00000     2.000000
10_q22.1             2     2.000000            2      2.00000     2.000000
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10_q22.3             2     2.000000            2      2.00000     2.000000
10_q23.1             2     2.000000            2      2.00000     2.000000
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10_q23.31            2     2.000000            2      2.00000     2.000000
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10_q24.31            2     2.000000            2      2.00000     2.000000
10_q24.32            2     2.000000            2      2.00000     2.000000
10_q24.33            2     2.000000            2      2.00000     2.000000
10_q25.1             2     2.000000            2      2.00000     2.000000
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10_q25.3             2     2.000000            2      2.00000     2.000000
10_q26.11            2     2.000000            2      2.00000     2.000000
10_q26.12            2     2.000000            2      2.00000     2.000000
10_q26.13            2     2.000000            2      2.00000     2.000000
10_q26.2             2     2.000000            2      2.00000     2.000000
10_q26.3             2     2.000000            2      2.00000     2.000000
11_p15.5             2     2.000000            2      2.00000     1.892696
11_p15.4             2     2.000000            2      2.00000     2.000000
11_p15.3             2     2.000000            2      2.00000     2.000000
11_p15.2             2     2.000000            2      2.00000     2.000000
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11_p11.12            2     2.000000            2      2.00000     2.000000
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11_q11               2     2.000000            2      2.00000     2.000000
11_q12.1             2     2.000000            2      2.00000     2.000000
11_q12.2             2     2.000000            2      2.00000     2.000000
11_q12.3             2     2.000000            2      2.00000     2.000000
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11_q13.3             2     2.000000            2      2.00000     2.000000
11_q13.4             2     2.000000            2      2.00000     2.000000
11_q13.5             2     2.000000            2      2.00000     2.000000
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11_q22.3             2     2.000000            2      2.00000     2.000000
11_q23.1             2     2.000000            2      2.00000     2.000000
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11_q24.1             2     2.000000            2      2.00000     2.000000
11_q24.2             2     2.751407            2      2.00000     2.000000
11_q24.3             2     3.442143            2      2.00000     2.000000
11_q25               2     3.442143            2      2.00000     2.000000
          TCGA-AB-3012
1_p36.32             2
1_p36.31             2
1_p36.23             2
1_p36.22             2
1_p36.21             2
1_p36.13             2
1_p36.12             2
1_p36.11             2
1_p35.3              2
1_p35.2              2
1_p35.1              2
1_p34.3              2
1_p34.2              2
1_p34.1              2
1_p33                2
1_p32.3              2
1_p32.2              2
1_p32.1              2
1_p31.3              2
1_p31.2              2
1_p31.1              2
1_p22.3              2
1_p22.2              2
1_p22.1              2
1_p21.3              2
1_p21.2              2
1_p21.1              2
1_p13.3              2
1_p13.2              2
1_p13.1              2
1_p12                2
1_p11.2              2
1_p11.1              2
1_q11                2
1_q12                2
1_q21.1              2
1_q21.2              2
1_q21.3              2
1_q22                2
1_q23.1              2
1_q23.2              2
1_q23.3              2
1_q24.1              2
1_q24.2              2
1_q24.3              2
1_q25.1              2
1_q25.2              2
1_q25.3              2
1_q31.1              2
1_q31.2              2
1_q31.3              2
1_q32.1              2
1_q32.2              2
1_q32.3              2
1_q41                2
1_q42.11             2
1_q42.12             2
1_q42.13             2
1_q42.2              2
1_q42.3              2
1_q43                2
1_q44                2
2_p25.3              2
2_p25.2              2
2_p25.1              2
2_p24.3              2
2_p24.2              2
2_p24.1              2
2_p23.3              2
2_p23.2              2
2_p23.1              2
2_p22.3              2
2_p22.2              2
2_p22.1              2
2_p21                2
2_p16.3              2
2_p16.2              2
2_p16.1              2
2_p15                2
2_p14                2
2_p13.3              2
2_p13.2              2
2_p13.1              2
2_p12                2
2_p11.2              2
2_p11.1              2
2_q11.1              2
2_q11.2              2
2_q12.1              2
2_q12.2              2
2_q12.3              2
2_q13                2
2_q14.1              2
2_q14.2              2
2_q14.3              2
2_q21.1              2
2_q21.2              2
2_q21.3              2
2_q22.1              2
2_q22.2              2
2_q22.3              2
2_q23.1              2
2_q23.2              2
2_q23.3              2
2_q24.1              2
2_q24.2              2
2_q24.3              2
2_q31.1              2
2_q31.2              2
2_q31.3              2
2_q32.1              2
2_q32.2              2
2_q32.3              2
2_q33.1              2
2_q33.2              2
2_q33.3              2
2_q34                2
2_q35                2
2_q36.1              2
2_q36.2              2
2_q36.3              2
2_q37.1              2
2_q37.2              2
2_q37.3              2
3_p26.3              2
3_p26.2              2
3_p26.1              2
3_p25.3              2
3_p25.2              2
3_p25.1              2
3_p24.3              2
3_p24.2              2
3_p24.1              2
3_p23                2
3_p22.3              2
3_p22.2              2
3_p22.1              2
3_p21.33             2
3_p21.32             2
3_p21.31             2
3_p21.2              2
3_p21.1              2
3_p14.3              2
3_p14.2              2
3_p14.1              2
3_p13                2
3_p12.3              2
3_p12.2              2
3_p12.1              2
3_p11.2              2
3_p11.1              2
3_q11.1              2
3_q11.2              2
3_q12.1              2
3_q12.2              2
3_q12.3              2
3_q13.11             2
3_q13.12             2
3_q13.13             2
3_q13.2              2
3_q13.31             2
3_q13.32             2
3_q13.33             2
3_q21.1              2
3_q21.2              2
3_q21.3              2
3_q22.1              2
3_q22.2              2
3_q22.3              2
3_q23                2
3_q24                2
3_q25.1              2
3_q25.2              2
3_q25.31             2
3_q25.32             2
3_q25.33             2
3_q26.1              2
3_q26.2              2
3_q26.31             2
3_q26.32             2
3_q26.33             2
3_q27.1              2
3_q27.2              2
3_q27.3              2
3_q28                2
3_q29                2
4_p16.3              2
4_p16.2              2
4_p16.1              2
4_p15.33             2
4_p15.32             2
4_p15.31             2
4_p15.2              2
4_p15.1              2
4_p14                2
4_p13                2
4_p12                2
4_p11                2
4_q11                2
4_q12                2
4_q13.1              2
4_q13.2              2
4_q13.3              2
4_q21.1              2
4_q21.21             2
4_q21.22             2
4_q21.23             2
4_q21.3              2
4_q22.1              2
4_q22.2              2
4_q22.3              2
4_q23                2
4_q24                2
4_q25                2
4_q26                2
4_q27                2
4_q28.1              2
4_q28.2              2
4_q28.3              2
4_q31.1              2
4_q31.21             2
4_q31.22             2
4_q31.23             2
4_q31.3              2
4_q32.1              2
4_q32.2              2
4_q32.3              2
4_q33                2
4_q34.1              2
4_q34.2              2
4_q34.3              2
4_q35.1              2
4_q35.2              2
5_p15.33             2
5_p15.32             2
5_p15.31             2
5_p15.2              2
5_p15.1              2
5_p14.3              2
5_p14.2              2
5_p14.1              2
5_p13.3              2
5_p13.2              2
5_p13.1              2
5_p12                2
5_q11.1              2
5_q11.2              2
5_q12.1              2
5_q12.2              2
5_q12.3              2
5_q13.1              2
5_q13.2              2
5_q13.3              2
5_q14.1              2
5_q14.2              2
5_q14.3              2
5_q15                2
5_q21.1              2
5_q21.2              2
5_q21.3              2
5_q22.1              2
5_q22.2              2
5_q22.3              2
5_q23.1              2
5_q23.2              2
5_q23.3              2
5_q31.1              2
5_q31.2              2
5_q31.3              2
5_q32                2
5_q33.1              2
5_q33.2              2
5_q33.3              2
5_q34                2
5_q35.1              2
5_q35.2              2
5_q35.3              2
6_p25.3              2
6_p25.2              2
6_p25.1              2
6_p24.3              2
6_p24.2              2
6_p24.1              2
6_p23                2
6_p22.3              2
6_p22.2              2
6_p22.1              2
6_p21.33             2
6_p21.32             2
6_p21.31             2
6_p21.2              2
6_p21.1              2
6_p12.3              2
6_p12.2              2
6_p12.1              2
6_p11.2              2
6_p11.1              2
6_q11.1              2
6_q11.2              2
6_q12                2
6_q13                2
6_q14.1              2
6_q14.2              2
6_q14.3              2
6_q15                2
6_q16.1              2
6_q16.2              2
6_q16.3              2
6_q21                2
6_q22.1              2
6_q22.2              2
6_q22.31             2
6_q22.32             2
6_q22.33             2
6_q23.1              2
6_q23.2              2
6_q23.3              2
6_q24.1              2
6_q24.2              2
6_q24.3              2
6_q25.1              2
6_q25.2              2
6_q25.3              2
6_q26                2
6_q27                2
7_p22.3              2
7_p22.2              2
7_p22.1              2
7_p21.3              2
7_p21.2              2
7_p21.1              2
7_p15.3              2
7_p15.2              2
7_p15.1              2
7_p14.3              2
7_p14.2              2
7_p14.1              2
7_p13                2
7_p12.3              2
7_p12.2              2
7_p12.1              2
7_p11.2              2
7_p11.1              2
7_q11.1              2
7_q11.21             2
7_q11.22             2
7_q11.23             2
7_q21.11             2
7_q21.12             2
7_q21.13             2
7_q21.2              2
7_q21.3              2
7_q22.1              2
7_q22.2              2
7_q22.3              2
7_q31.1              2
7_q31.2              2
7_q31.31             2
7_q31.32             2
7_q31.33             2
7_q32.1              2
7_q32.2              2
7_q32.3              2
7_q33                2
7_q34                2
7_q35                2
7_q36.1              2
7_q36.2              2
7_q36.3              2
8_p23.3              2
8_p23.2              2
8_p23.1              2
8_p22                2
8_p21.3              2
8_p21.2              2
8_p21.1              2
8_p12                2
8_p11.23             2
8_p11.22             2
8_p11.21             2
8_q11.1              2
8_q11.21             2
8_q11.22             2
8_q11.23             2
8_q12.1              2
8_q12.2              2
8_q12.3              2
8_q13.1              2
8_q13.2              2
8_q13.3              2
8_q21.11             2
8_q21.12             2
8_q21.13             2
8_q21.2              2
8_q21.3              2
8_q22.1              2
8_q22.2              2
8_q22.3              2
8_q23.1              2
8_q23.2              2
8_q23.3              2
8_q24.11             2
8_q24.12             2
8_q24.13             2
8_q24.21             2
8_q24.22             2
8_q24.23             2
8_q24.3              2
9_p24.3              2
9_p24.2              2
9_p24.1              2
9_p23                2
9_p22.3              2
9_p22.2              2
9_p22.1              2
9_p21.3              2
9_p21.2              2
9_p21.1              2
9_p13.3              2
9_p13.2              2
9_p13.1              2
9_q21.11             2
9_q21.12             2
9_q21.13             2
9_q21.2              2
9_q21.31             2
9_q21.32             2
9_q21.33             2
9_q22.1              2
9_q22.2              2
9_q22.31             2
9_q22.32             2
9_q22.33             2
9_q31.1              2
9_q31.2              2
9_q31.3              2
9_q32                2
9_q33.1              2
9_q33.2              2
9_q33.3              2
9_q34.11             2
9_q34.12             2
9_q34.13             2
9_q34.2              2
9_q34.3              2
10_p15.3             2
10_p15.2             2
10_p15.1             2
10_p14               2
10_p13               2
10_p12.33            2
10_p12.32            2
10_p12.31            2
10_p12.2             2
10_p12.1             2
10_p11.23            2
10_p11.22            2
10_p11.21            2
10_p11.1             2
10_q11.1             2
10_q11.21            2
10_q11.22            2
10_q11.23            2
10_q21.1             2
10_q21.2             2
10_q21.3             2
10_q22.1             2
10_q22.2             2
10_q22.3             2
10_q23.1             2
10_q23.2             2
10_q23.31            2
10_q23.32            2
10_q23.33            2
10_q24.1             2
10_q24.2             2
10_q24.31            2
10_q24.32            2
10_q24.33            2
10_q25.1             2
10_q25.2             2
10_q25.3             2
10_q26.11            2
10_q26.12            2
10_q26.13            2
10_q26.2             2
10_q26.3             2
11_p15.5             2
11_p15.4             2
11_p15.3             2
11_p15.2             2
11_p15.1             2
11_p14.3             2
11_p14.2             2
11_p14.1             2
11_p13               2
11_p12               2
11_p11.2             2
11_p11.12            2
11_p11.11            2
11_q11               2
11_q12.1             2
11_q12.2             2
11_q12.3             2
11_q13.1             2
11_q13.2             2
11_q13.3             2
11_q13.4             2
11_q13.5             2
11_q14.1             2
11_q14.2             2
11_q14.3             2
11_q21               2
11_q22.1             2
11_q22.2             2
11_q22.3             2
11_q23.1             2
11_q23.2             2
11_q23.3             2
11_q24.1             2
11_q24.2             2
11_q24.3             2
11_q25               2
 [ reached 'max' / getOption("max.print") -- omitted 291 rows ]

$arm_events
    Tumor_Sample_Barcode chromosome    arm       logR         cn
                  <char>     <char> <char>      <num>      <num>
 1:         TCGA-AB-2878          1    1_p  0.8869900  3.6986275
 2:         TCGA-AB-2915          1    1_q  0.8090840  3.5041973
 3:         TCGA-AB-2904         11   11_p -0.8574160  1.1038805
 4:         TCGA-AB-2923         11   11_q  0.4651015  2.7608289
 5:         TCGA-AB-2885         12   12_p -0.7758880  1.1680581
 6:         TCGA-AB-2838         16   16_q -0.7802390  1.1645407
 7:         TCGA-AB-2878         16   16_q -0.7250870  1.2099211
 8:         TCGA-AB-2857         18   18_p -0.6628910  1.2632227
 9:         TCGA-AB-2868         19   19_q  0.4265440  2.6880202
10:         TCGA-AB-2938         19   19_p  1.3937605  5.2552540
11:         TCGA-AB-2868         20   20_q -0.3063870  1.6173288
12:         TCGA-AB-2908         21   21_q  2.3373250 10.1072947
13:         TCGA-AB-2938         21   21_q  1.3955840  5.2619006
14:         TCGA-AB-2908          3    3_p -0.8914000  1.0781815
15:         TCGA-AB-2860          5    5_q -0.4945560  1.4195602
16:         TCGA-AB-2878          5    5_q -0.9355640  1.0456761
17:         TCGA-AB-2885          5    5_q -0.4120360  1.5031240
18:         TCGA-AB-2904          5    5_q -0.8329730  1.1227424
19:         TCGA-AB-2920          5    5_q -0.8753310  1.0902576
20:         TCGA-AB-2935          5    5_q -0.6009960  1.3185973
21:         TCGA-AB-2939          5    5_q -1.0028790  0.9980064
22:         TCGA-AB-2943          5    5_q -0.7364710  1.2004115
23:         TCGA-AB-2952          5    5_q -0.8688790  1.0951443
24:         TCGA-AB-2806          7    7_p -0.9265170  1.0522540
25:         TCGA-AB-2923          7    7_q -0.9067680  1.0667573
26:         TCGA-AB-3007          7    7_q -0.7792230  1.1653611
27:         TCGA-AB-2823          8    8_q  0.7284860  3.3137988
28:         TCGA-AB-2872          9    9_q -0.9288210  1.0505749
    Tumor_Sample_Barcode chromosome    arm       logR         cn
    Variant_Classification
                    <char>
 1:                   Gain
 2:                   Gain
 3:                   Loss
 4:                   Gain
 5:                   Loss
 6:                   Loss
 7:                   Loss
 8:                   Loss
 9:                   Gain
10:                   Gain
11:                   Loss
12:                   Gain
13:                   Gain
14:                   Loss
15:                   Loss
16:                   Loss
17:                   Loss
18:                   Loss
19:                   Loss
20:                   Loss
21:                   Loss
22:                   Loss
23:                   Loss
24:                   Loss
25:                   Loss
26:                   Loss
27:                   Gain
28:                   Loss
    Variant_Classification

$band_events
     Tumor_Sample_Barcode chromosome cytoband       logR       cn
                   <char>     <char>   <char>      <num>    <num>
  1:         TCGA-AB-2878          1   p36.32  0.8869900 3.698627
  2:         TCGA-AB-2878          1   p36.31  0.8869900 3.698627
  3:         TCGA-AB-2878          1   p36.23  0.8869900 3.698627
  4:         TCGA-AB-2878          1   p36.22  0.8869900 3.698627
  5:         TCGA-AB-2878          1   p36.21  0.8869900 3.698627
 ---                                                             
809:         TCGA-AB-2971          9   q21.33 -0.4882855 1.425744
810:         TCGA-AB-2991          9    p24.1 -0.7362910 1.200561
811:         TCGA-AB-2920          X    q26.2 -0.6192365 1.302031
812:         TCGA-AB-2920          X    q26.3 -0.6192365 1.302031
813:         TCGA-AB-2955          X      q28 -0.3354080 1.585120
     Variant_Classification
                     <char>
  1:                    Amp
  2:                    Amp
  3:                    Amp
  4:                    Amp
  5:                    Amp
 ---                       
809:                    Del
810:                    Del
811:                    Del
812:                    Del
813:                    Del

> 
> #Heighlight some genes as annotation
> laml.maf = system.file("extdata", "tcga_laml.maf.gz", package = "maftools") #MAF file
> laml.clin = system.file('extdata', 'tcga_laml_annot.tsv', package = 'maftools') #clinical data
> laml = read.maf(maf = laml.maf, clinicalData = laml.clin)
-Reading
Warning in writeBin(bfr, con = out, size = 1L) :
  problem writing to connection
Error in data.table::fread(file = maf, sep = "\t", stringsAsFactors = FALSE,  : 
  File is empty: /tmp/RtmpRjwS89/file1918281b91c92c
Calls: read.maf -> <Anonymous>
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
maf2mae 10.277  0.464  10.684
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... ERROR
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Error in writeLines(x, con, useBytes = TRUE, ...) : 
  Error writing to connection:  No space left on device
* DONE

Status: 2 ERRORs, 1 WARNING, 5 NOTEs
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/maftools.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL maftools
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘maftools’ ...
** this is package ‘maftools’ version ‘2.23.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhtslib/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/zlibbioc/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c ntcounts.c -o ntcounts.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhtslib/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/zlibbioc/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c snpcounts.c -o snpcounts.o
snpcounts.c: In function ‘snpcounts’:
snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=]
   89 |   fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped);
      |                                            ~~~^     ~~~~~~~~~~
      |                                               |     |
      |                                               |     uint64_t {aka long unsigned int}
      |                                               long long unsigned int
      |                                            %lu
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhtslib/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/zlibbioc/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c somaticfreq.c -o somaticfreq.o
gcc -shared -L/usr/local/lib -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz
installing to /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-maftools/00new/maftools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maftools)