Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-03-24 12:36 -0400 (Mon, 24 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 870 |
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Package 172/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
rhdf5filters 1.19.2 (landing page) Mike Smith
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
To the developers/maintainers of the rhdf5filters package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: rhdf5filters |
Version: 1.19.2 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL rhdf5filters |
StartedAt: 2025-03-24 12:05:10 -0400 (Mon, 24 Mar 2025) |
EndedAt: 2025-03-24 12:05:30 -0400 (Mon, 24 Mar 2025) |
EllapsedTime: 19.4 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL rhdf5filters ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’ * installing *source* package ‘rhdf5filters’ ... ** this is package ‘rhdf5filters’ version ‘1.19.2’ ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed configure: is Bioc build machine configure: configuring BZIP2 filter... configure: compiling bundled bzip2 library configure: configuring the Zstd filter... configure: compiling bundled Zstd library configure: configuring the BLOSC filter... configure: compiling bundled BLOSC library checking whether C compiler accepts -msse2... yes configure: Bioc build machine; disabling MAVX2 checking for gcc __builtin_cpu_init function... (cached) true checking for x86 sse2 instruction support... yes configure: configuring the VBZ filter machine=x86_64 CPU_ARCH=x86 checking whether C compiler accepts -mavx... yes checking for x86 avx instruction support... yes VBZ_FLAGS=-mssse3 configure: creating ./config.status config.status: creating src/bzip2/Makefile config.status: creating src/zstd/Makefile config.status: creating src/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/blosc/Makefile config.status: creating src/vbz/Makefile config.status: creating src/vbz/vbz/Makefile config.status: creating src/vbz/third_party/streamvbyte/Makefile config.status: creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ make -C zstd make[1]: Entering directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/rhdf5filters/src/zstd' gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o gcc -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o compress/zstd_lazy.c:2157:1: fatal error: error writing to /tmp/cczvk4Ht.s: No space left on device 2157 | } | ^ compilation terminated. make[1]: *** [Makefile:51: compress/zstd_lazy.o] Error 1 make[1]: Leaving directory '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/rhdf5filters/src/zstd' make: *** [Makevars:38: libH5Zzstd.so] Error 2 ERROR: compilation failed for package ‘rhdf5filters’ * removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/rhdf5filters’ * restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/rhdf5filters’