| Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-03-22 12:13 -0400 (Sat, 22 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 869 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| sva 3.55.0 (landing page) Jeffrey T. Leek
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
|
To the developers/maintainers of the sva package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: sva |
| Version: 3.55.0 |
| Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data sva |
| StartedAt: 2025-03-22 12:11:09 -0400 (Sat, 22 Mar 2025) |
| EndedAt: 2025-03-22 12:11:10 -0400 (Sat, 22 Mar 2025) |
| EllapsedTime: 0.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data sva
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* checking for file ‘sva/DESCRIPTION’ ... OK
* preparing ‘sva’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘sva’ ...
** this is package ‘sva’ version ‘3.55.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c sva.c -o sva.o
sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces]
27 | R_CallMethodDef callMethods[] = {
| ^
gcc -shared -L/usr/local/lib -o sva.so sva.o
installing to /tmp/RtmpgXALQc/Rinst1064a05c85a9d2/00LOCK-sva/00new/sva/libs
** R
Warning in .file_append_ensuring_LFs(outFile, codeFiles) :
write error during file append
Warning in .file_append_ensuring_LFs(outFile, codeFiles) :
write error during file append
Warning in .file_append_ensuring_LFs(outFile, codeFiles) :
write error during file append
Error in .install_package_code_files(".", instdir) :
unable to write code files
ERROR: unable to collate and parse R files for package ‘sva’
* removing ‘/tmp/RtmpgXALQc/Rinst1064a05c85a9d2/sva’
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ERROR: package installation failed