Back to Build/check report for BioC 3.20 experimental data |
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This page was generated on 2025-02-11 15:42 -0500 (Tue, 11 Feb 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4767 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 156/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GSBenchMark 1.26.0 (landing page) Bahman Afsari
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the GSBenchMark package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GSBenchMark |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GSBenchMark_1.26.0.tar.gz |
StartedAt: 2025-02-11 12:08:08 -0500 (Tue, 11 Feb 2025) |
EndedAt: 2025-02-11 12:08:42 -0500 (Tue, 11 Feb 2025) |
EllapsedTime: 34.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSBenchMark.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GSBenchMark_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GSBenchMark.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘GSBenchMark/DESCRIPTION’ ... OK * this is package ‘GSBenchMark’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSBenchMark’ can be installed ... OK * checking installed package size ... NOTE installed size is 41.9Mb sub-directories of 1Mb or more: data 41.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GSBenchMark.Rcheck/00check.log’ for details.
GSBenchMark.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL GSBenchMark ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘GSBenchMark’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSBenchMark)
GSBenchMark.Rcheck/GSBenchMark-Ex.timings
name | user | system | elapsed | |
GSBenchMarkDatasets | 0.211 | 0.010 | 0.222 | |
bipolar_GDS2190 | 0.200 | 0.015 | 0.216 | |
breast_GDS807 | 0.208 | 0.006 | 0.214 | |
diracpathways | 0.007 | 0.000 | 0.007 | |
exprsdata | 0.318 | 0.017 | 0.336 | |
leukemia_GSEA | 0.199 | 0.009 | 0.208 | |
logexprsdata | 0.327 | 0.014 | 0.341 | |
marfan_GDS2960 | 0.113 | 0.004 | 0.116 | |
melanoma_GDS2735 | 0.271 | 0.019 | 0.290 | |
parkinsons_GDS2519 | 0.471 | 0.032 | 0.502 | |
phenotypes | 0.354 | 0.022 | 0.376 | |
prostate_GDS2545_m_nf | 0.193 | 0.006 | 0.199 | |
prostate_GDS2545_m_p | 0.351 | 0.020 | 0.371 | |
prostate_GDS2545_p_nf | 0.324 | 0.013 | 0.337 | |
sarcoma_data | 0.581 | 0.065 | 0.647 | |
squamous_GDS2520 | 0.206 | 0.010 | 0.215 | |