Package: EBImage

Version: 1.3.019

Command: /loc/biocbuild/1.9d/R/bin/R CMD check EBImage_1.3.019.tar.gz

RetCode: 1

Time: 152.0 seconds

Status: ERROR

CheckDir: EBImage.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/EBImage.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-06-04 r38279)
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '1.3.019'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... WARNING
scale:
  function(x, center, scale)
scale.image:
  function(x, dx, dy)

See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.
LaTeX errors found:

! You can't use `macro parameter character #' in horizontal mode.
 ...as character in X11 format, i.e. "##
                                                  FF0000". \item [\code {str...
l.590 }
       
--
! You can't use `macro parameter character #' in horizontal mode.
 ...as character in X11 format, i.e. "##
                                                  00FF00" \item [\code {doFi...
l.590 }
       
--
! You can't use `macro parameter character #' in horizontal mode.
l.627 color strings in form "#
                              0000FFFF0000" instead of "#00FF00".
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
--
! You can't use `macro parameter character #' in horizontal mode.
l.627 ...ngs in form "#0000FFFF0000" instead of "#
                                                  00FF00".
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
--
! You can't use `macro parameter character #' in horizontal mode.
l.638 of 16-bit "#
                  0000FFFF0000" or 8-bit "#00FF00".
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
--
! You can't use `macro parameter character #' in horizontal mode.
l.638 of 16-bit "#0000FFFF0000" or 8-bit "#
                                           00FF00".
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.

* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.0.7 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/include
R found in: /loc/biocbuild/1.9d/R
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c algorithms2D.cpp -o algorithms2D.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c display.cpp -o display.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c drawables.cpp -o drawables.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c filters2D.cpp -o filters2D.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c filters2D_magick.cpp -o filters2D_magick.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c io.cpp -o io.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include  -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -shared -L/usr/local/lib64 -o EBImage.so algorithms2D.o common.o conversions.o display.o drawables.o filters2D.o filters2D_magick.o io.o libmain.o -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -L/usr/lib64 -Wl,--rpath -Wl,/usr/lib64 -lfreetype -L/usr/lib -lMagick++ -lWand -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread  
** R
** inst
** save image
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  EBImage-package                   text    html    latex
  algorithms2D.objectCount          text    html    latex   example
  class.Drawable                    text    html    latex   example
  class.Image                       text    html    latex   example
  colors                            text    html    latex
  filters2D.distMap                 text    html    latex   example
  filters2D.draw                    text    html    latex   example
  filters2D.magick-colors           text    html    latex   example
  filters2D.magick-enhance          text    html    latex   example
  filters2D.magick-segment          text    html    latex   example
  filters2D.magick-transform        text    html    latex   example
  filters2D.magick                  text    html    latex
  filters2D.thresh                  text    html    latex   example
  image.io                          text    html    latex   example
  internals                         text    html    latex
** building package indices ...
* DONE (EBImage)