Package: gaggle

Version: 1.1.5

Command: /loc/biocbuild/1.9d/R/bin/R CMD check gaggle_1.1.5.tar.gz

RetCode: 1

Time: 69.9 seconds

Status: ERROR

CheckDir: gaggle.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/gaggle.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-07-18 r38641)
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.1.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking S3 generic/method consistency ... WARNING
Error occurred during initialization of VM
Signal chaining not allowed for VM interrupt signal, try -XX:+UseAltSigs.
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
Error occurred during initialization of VM
Signal chaining not allowed for VM interrupt signal, try -XX:+UseAltSigs.
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Error occurred during initialization of VM
Signal chaining not allowed for VM interrupt signal, try -XX:+UseAltSigs.
See section 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... ERROR
Error occurred during initialization of VM

* Installing *source* package 'gaggle' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'gaggle'
     Formats: text html latex example 
  broadcast                         text    html    latex
  gaggleInit                        text    html    latex
  geese                             text    html    latex
  getCluster                        text    html    latex
  getHashMap                        text    html    latex
  getMatrix                         text    html    latex
  getNameList                       text    html    latex
  getNetwork                        text    html    latex
  getSpecies                        text    html    latex
  getTargetGoose                    text    html    latex
  hideGoose                         text    html    latex
  setSpecies                        text    html    latex
  setTargetGoose                    text    html    latex
  showGoose                         text    html    latex
  testGagglePackage                 text    html    latex
** building package indices ...
* DONE (gaggle)