Package: EBarrays

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check EBarrays_1.5.0.tar.gz

RetCode: 0

Time: 191.3 seconds

Status: WARNINGS

CheckDir: EBarrays.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/1.9d/Rpacks/EBarrays.Rcheck'
* using R version 2.4.0 alpha (2006-09-07 r39185)
* checking for file 'EBarrays/DESCRIPTION' ... OK
* this is package 'EBarrays' version '1.5.0'
* checking package dependencies ... WARNING
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'EBarrays' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBarrays-Ex.R ... OK
* checking examples ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBarrays-manual.tex ... OK
* checking EBarrays-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/1.9d/Rpacks/EBarrays.Rcheck/00check.log
for details

* Installing *source* package 'EBarrays' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c ebarrays.c -o ebarrays.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBarrays.so ebarrays.o   -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c ebarrays.c -o ebarrays.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBarrays.so ebarrays.o   -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** data
** demo
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
[1] "ebarraysFamily"
[1] "ebarraysPatterns"
[1] "show"
[1] "show"
[1] "ebarraysEmFit"
[1] "show"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "postprob"
[1] "ebarraysPostProb"
[1] "show"
[1] "postprob"
[1] "postprob"
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
** help
 >>> Building/Updating help pages for package 'EBarrays'
     Formats: text html latex example 
  ebarraysFamily-class              text    html    latex   example
  ebplots                           text    html    latex   example
  emfit                             text    html    latex   example
  gould                             text    html    latex   example
  postprob                          text    html    latex
  utilities                         text    html    latex   example
** building package indices ...
* DONE (EBarrays)