Package: RPostgreSQL

Version: 0.0.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check RPostgreSQL_0.0.0.tar.gz

RetCode: 1

Time: 23.2 seconds

Status: ERROR

CheckDir: RPostgreSQL.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/RPostgreSQL.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'RPostgreSQL/DESCRIPTION' ... OK
* this is package 'RPostgreSQL' version '0.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RPostgreSQL' can be installed ... WARNING
Found the following significant warnings:
  WARNING: use of install.R is no longer supported
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... WARNING
install.R
These files are deprecated. See manual 'Writing R Extensions'.
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following non-empty subdirectories of 'inst' also used by R:
  libs
It is recommended not to interfere with package subdirectories used by R.
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... ERROR
Loading required package: DBI

Error in library.dynam(lib, package, package.lib) : 
	shared library 'NULL' not found
Error: package/namespace load failed for 'RPostgreSQL'
Execution halted

It looks like this package has a loading problem: see the messages for
details.

* Installing *source* package 'RPostgreSQL' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... yes
checking for mysql_init in -lmysqlclient... yes
checking for mysql.h... no
checking for /usr/local/include/mysql/mysql.h... no
checking for /usr/include/mysql/mysql.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/include/mysql -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c RS-DBI.c -o RS-DBI.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/include/mysql -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c RS-MySQL.c -o RS-MySQL.o
gcc -shared -L/usr/local/lib64 -o RPostgreSQL.so RS-DBI.o RS-MySQL.o -lmysqlclient -lz  
** R
** inst
WARNING: use of install.R is no longer supported
** preparing package for lazy loading
Loading required package: DBI

** help
 >>> Building/Updating help pages for package 'RPostgreSQL'
     Formats: text html latex example 
  MySQL                             text    html    latex   example
  MySQLConnection-class             text    html    latex   example
  MySQLDriver-class                 text    html    latex   example
  MySQLObject-class                 text    html    latex   example
  MySQLResult-class                 text    html    latex   example
  S4R                               text    html    latex
  dbApply-methods                   text    html    latex   example
  dbApply                           text    html    latex   example
  dbCallProc-methods                text    html    latex
  dbCommit-methods                  text    html    latex   example
  dbConnect-methods                 text    html    latex   example
  dbDataType-methods                text    html    latex   example
  dbDriver-methods                  text    html    latex   example
  dbGetInfo-methods                 text    html    latex   example
  dbListTables-methods              text    html    latex   example
  dbObjectId-class                  text    html    latex   example
  dbReadTable-methods               text    html    latex   example
  dbSendQuery-methods               text    html    latex   example
  dbSetDataMappings-methods         text    html    latex   example
  fetch-methods                     text    html    latex   example
  isIdCurrent                       text    html    latex   example
  make.db.names-methods             text    html    latex   example
  mysqlDBApply                      text    html    latex   example
  mysqlSupport                      text    html    latex
  safe.write                        text    html    latex   example
  summary-methods                   text    html    latex
** building package indices ...
* DONE (RPostgreSQL)