Back to the "Multiple platform build/check report"
| Package 177/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
ScISI1.3.2Tony Chiang | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | [ WARNINGS ] | OK | |
| Windows XP | i686 | OK | WARNINGS | skipped | |
| Mac OS X (10.4.6) | i686 | OK | WARNINGS |
| Package: ScISI |
| Version: 1.3.2 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check ScISI_1.3.2.tar.gz |
| RetCode: 0 |
| Time: 405.0 seconds |
| Status: WARNINGS |
| CheckDir: ScISI.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/ScISI.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'ScISI/DESCRIPTION' ... OK * this is package 'ScISI' version '1.3.2' * checking package dependencies ... WARNING package 'methods' is used but not declared See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'ScISI' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... WARNING Loading required package: apComplex Loading required package: graph Loading required package: Ruuid Loading required package: methods Error in inherits(x, "factor") : could not find function "installed.packages" Error: .onLoad failed in 'loadNamespace' for 'Ruuid' Error: package 'Ruuid' could not be loaded Execution halted It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating ScISI-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating ScISI-manual.tex ... OK * checking ScISI-manual.tex ... OK WARNING: There were 2 warnings, see D:/biocbld/1.9d/Rpacks/ScISI.Rcheck/00check.log for details
ScISI.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/ScISI.Rcheck
---------- Making package ScISI ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example chm
Desc-methods text html latex chm
ID-methods text html latex chm
JaccardCoef text html latex example chm
ScISI text html latex example chm
ScISI2html text html latex example chm
ScISIverified text html latex example chm
arp23 text html latex example chm
arp23G text html latex example chm
arp23Orf text html latex example chm
arp23Y2HG text html latex example chm
calcGraphStats text html latex example chm
cfia text html latex example chm
cfiaOrf text html latex example chm
checkComplex text html latex example chm
checkSGN text html latex example chm
compBijection text html latex example chm
compareComplex text html latex example chm
createGODataFrame text html latex example chm
createGOMatrix text html latex example chm
createMipsDataFrame text html latex example chm
createMipsMatrix text html latex example chm
createYeastDataObj text html latex example chm
dataS text html latex example chm
eAt text html latex example chm
eAt2 text html latex example chm
edgeProp text html latex example chm
egEBI16112 text html latex example chm
expStats text html latex example chm
findSubComp text html latex example chm
gavin2mergeMG text html latex example chm
getAPMSData text html latex example chm
getGOInfo text html latex example chm
getLocOrfs text html latex example chm
getMipsInfo text html latex example chm
getURL-methods text html latex chm
graphSumStats text html latex example chm
ho2mergeMGG text html latex example chm
krogan2mergeMGGH text html latex example chm
locScISI text html latex example chm
mapping2SysG text html latex example chm
mappingG text html latex example chm
maximizeSimilarity text html latex example chm
meanDeg text html latex example chm
mergeBGMat text html latex example chm
mips2go text html latex example chm
nAt text html latex chm
nAtMap text html latex example chm
nucComp text html latex example chm
recCompSize text html latex example chm
redundantM text html latex example chm
rmByEvi text html latex example chm
runAlignment text html latex example chm
runCompareComplex text html latex example chm
subCompM text html latex example chm
sumStats text html latex example chm
unWantedComp text html latex example chm
xtraGO text html latex example chm
xtraGONodes text html latex example chm
yeastData-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm
Compile time: 0 minutes, 0 seconds
60 Topics
144 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm, 68,348 bytes
Compression decreased file by 82,597 bytes.
preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: Ruuid
Loading required package: GO
Loading required package: GOstats
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: RBGL
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: multtest
Loading required package: Category
Loading required package: KEGG
Loading required package: hgu95av2
Loading required package: Rgraphviz
Loading required package: geneplotter
Loading required package: YEAST
Loading required package: xtable
Attaching package: 'xtable'
The following object(s) are masked from package:graph :
label
adding MD5 sums
* DONE (ScISI)