Package: GeneMeta

Version: 1.5.0

Command: E:\hpages\1.9d\R\bin\R.exe CMD check GeneMeta_1.5.0.tar.gz

RetCode: 1

Time: 57.8 seconds

Status: ERROR

CheckDir: GeneMeta.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/hpages/1.9d/Rpacks/GeneMeta.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'GeneMeta/DESCRIPTION' ... OK
* this is package 'GeneMeta' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneMeta' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GeneMeta-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'GeneMeta-Ex.R' failed.
The error most likely occurred in:

> ### * zscore
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: zScores
> ### Title: Tools for Meta-analysis of gene expression data.
> ### Aliases: zScores multExpFDR zScoreFDR zScorePermuted
> ### Keywords: manip
> 
> ### ** Examples
> 
> data(Nevins)
> ##Splitting 
> thestatus  <- Nevins$ER.status
> group1     <- which(thestatus=="pos")
> group2     <- which(thestatus=="neg")
> rrr        <- c(sample(group1, floor(length(group1)/2)),
+                 sample(group2,ceiling(length(group2)/2)))
Error in sample(length(x), size, replace, prob) : 
	invalid 'x' argument
Execution halted

installing R.css in E:/hpages/1.9d/Rpacks/GeneMeta.Rcheck


---------- Making package GeneMeta ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneMeta'
     Formats: text html latex example chm 
  CountPlot                         text    html    latex   example chm
  Nevins                            text    html    latex   example chm
  dstar                             text    html    latex   example chm
  f.Q                               text    html    latex   example chm
  tau                               text    html    latex   example chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\hpages\1.9d\Rpacks\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm


Compile time: 0 minutes, 0 seconds
7	Topics
26	Local links
1	Internet link
1	Graphic


Created e:\hpages\1.9d\Rpacks\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm, 25,127 bytes
Compression decreased file by 2,048 bytes.
  adding MD5 sums

* DONE (GeneMeta)