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| Package 106/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
limma2.10.0Gordon SmythLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| churchill | Solaris 2.9 | sparc | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| derby | Mac OS X (10.4.9) | i686 | OK | [ OK ] |
| Package: limma |
| Version: 2.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check limma_2.10.0.tar.gz |
| RetCode: 0 |
| Time: 234.9 seconds |
| Status: OK |
| CheckDir: limma.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.0-bioc/meat/limma.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'limma/DESCRIPTION' ... OK * this is package 'limma' version '2.10.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'limma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating limma-Ex.R ... OK * checking examples ... OK * checking tests ... Running 'limma-Tests.R' Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...908,909c908,909 < mu+alpha 0.3333333 3.333333e-01 5.551115e-17 < mu+beta -0.3333333 5.551115e-17 3.333333e-01 --- > mu+alpha 0.3333333 3.333333e-01 -1.821460e-17 > mu+beta -0.3333333 -1.821460e-17 3.333333e-01 OK OK * checking package vignettes in 'inst/doc' ... OK * creating limma-manual.tex ... OK * checking limma-manual.tex ... OK
limma.Rcheck/00install.out:
* Installing *source* package 'limma' ...
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example
01Introduction text html latex
02classes text html latex
03reading text html latex
04Background text html latex
05Normalization text html latex
06linearmodels text html latex
07SingleChannel text html latex
08Tests text html latex
09Diagnostics text html latex
10Other text html latex
LargeDataObject text html latex example
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arrayWeights text html latex example
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contrasts.fit text html latex example
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dnormexp text html latex
dupcor text html latex example
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geneSetTest text html latex example
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lm.series text html latex
lmFit text html latex example
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volcanoplot text html latex example
weightedmedian text html latex example
writefit text html latex
zscore text html latex example
** building package indices ...
* DONE (limma)