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Package 106/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
limma2.10.0Gordon SmythLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
derby | Mac OS X (10.4.9) | i686 | OK | OK |
Package: limma |
Version: 2.10.0 |
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check limma_2.10.0.tar.gz |
RetCode: 0 |
Time: 236.2 seconds |
Status: OK |
CheckDir: limma.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.0-bioc/meat/limma.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'limma/DESCRIPTION' ... OK * this is package 'limma' version '2.10.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'limma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating limma-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/limma.Rcheck/tests' Running 'limma-Tests.R' Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/limma.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating limma-manual.tex ... OK * checking limma-manual.tex ... OK
limma.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/limma.Rcheck ---------- Making package limma ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'limma' Formats: text html latex example chm 01Introduction text html latex chm 02classes text html latex chm 03reading text html latex chm 04Background text html latex chm 05Normalization text html latex chm 06linearmodels text html latex chm 07SingleChannel text html latex chm 08Tests text html latex chm 09Diagnostics text html latex chm 10Other text html latex chm LargeDataObject text html latex example chm PrintLayout text html latex example chm TestResults text html latex example chm anova-method text html latex chm arrayWeights text html latex example chm arrayWeightsQuick text html latex example chm asMatrixWeights text html latex example chm asdataframe text html latex chm asmalist text html latex chm asmatrix text html latex chm auROC text html latex example chm avedups text html latex chm backgroundcorrect text html latex example chm blockDiag text html latex example chm bwss text html latex chm bwss.matrix text html latex chm cbind text html latex example chm changelog text html latex chm channel2M text html latex example chm classifytests text html latex example chm contrasts.fit text html latex example chm controlStatus text html latex example chm convest text html latex example chm decideTests text html latex chm dim text html latex example chm dimnames text html latex chm dnormexp text html latex chm dupcor text html latex example chm ebayes text html latex example chm exprsMA text html latex chm exprset2 text html latex chm fitfdist text html latex chm fitted.MArrayLM text html latex chm geneSetTest text html latex example chm getSpacing text html latex example chm getlayout text html latex example chm gls.series text html latex chm gridspotrc text html latex chm heatdiagram text html latex example chm helpMethods text html latex example chm imageplot text html latex example chm imageplot3by2 text html latex chm intraspotCorrelation text html latex example chm isfullrank text html latex example chm isnumeric text html latex example chm kooperberg text html latex example chm limmaUsersGuide text html latex example chm lm.series text html latex chm lmFit text html latex example chm lmscFit text html latex example chm loessfit text html latex example chm m.spot text html latex chm ma3x3 text html latex example chm makeContrasts text html latex example chm makeunique text html latex example chm malist text html latex chm marraylm text html latex chm mdplot text html latex chm merge text html latex example chm mergeScansRG text html latex example chm modelMatrix text html latex example chm modifyWeights text html latex example chm mrlm text html latex chm normalizeMedianAbsValues text html latex example chm normalizeRobustSpline text html latex example chm normalizeWithinArrays text html latex example chm normalizebetweenarrays text html latex example chm normalizeprintorder text html latex example chm normalizequantiles text html latex chm normexp text html latex chm normexpfit text html latex example chm normexpsignal text html latex example chm plotDensities text html latex example chm plotFB text html latex chm plotlines text html latex chm plotma text html latex example chm plotma3by2 text html latex chm plotprinttiploess text html latex chm poolvar text html latex example chm printHead text html latex chm printorder text html latex example chm printtipWeights text html latex example chm protectMetachar text html latex example chm qqt text html latex example chm qualwt text html latex example chm read.columns text html latex chm read.maimages text html latex example chm read.matrix text html latex chm read.series text html latex chm readGPRHeader text html latex chm readImaGeneHeader text html latex example chm readSpotTypes text html latex chm readTargets text html latex chm readgal text html latex example chm removeext text html latex example chm residuals.MArrayLM text html latex chm rg.genepix text html latex chm rg.quantarray text html latex chm rg.series.spot text html latex chm rg.spot text html latex chm rglist text html latex chm splitName text html latex chm squeezeVar text html latex example chm strsplit2 text html latex example chm subsetting text html latex example chm summary text html latex chm targetsA2C text html latex example chm tmixture text html latex chm toptable text html latex example chm trigammainverse text html latex example chm trimWhiteSpace text html latex example chm uniquegenelist text html latex example chm unwrapdups text html latex example chm venn text html latex example chm volcanoplot text html latex example chm weightedmedian text html latex example chm writefit text html latex chm zscore text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.0-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm Compile time: 0 minutes, 1 second 129 Topics 669 Local links 17 Internet links 1 Graphic Created d:\biocbld\bbs-2.0-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm, 207,826 bytes Compression decreased file by 322,701 bytes. preparing package limma for lazy loading adding MD5 sums * DONE (limma)