Package: easyRNASeq

Version: 1.2.0

Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings easyRNASeq_1.2.0.tar.gz

StartedAt: 2012-04-01 00:41:12 -0700 (Sun, 01 Apr 2012)

EndedAt: 2012-04-01 00:44:48 -0700 (Sun, 01 Apr 2012)

EllapsedTime: 215.8 seconds

RetCode: 0

Status:  OK

CheckDir: easyRNASeq.Rcheck

Warnings: 0

* using log directory '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/easyRNASeq.Rcheck'
* using R version 2.15.0 RC (2012-03-22 r58802)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'easyRNASeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'easyRNASeq' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'easyRNASeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'easyRNASeq' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'
Creating a generic function for 'print' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
** building package indices
** installing vignettes
   'easyRNASeq.Rnw' 
** testing if installed package can be loaded
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'

* DONE (easyRNASeq)

name	user	system	elapsed
DESeq-edgeR-common-methods	0	0	0
DESeq-methods	0.000	0.000	0.001
GenomicRanges-methods	0.000	0.000	0.001
IRanges-methods	0	0	0
ShortRead-methods	0	0	0
easyRNASeq-accessors	0.000	0.000	0.002
easyRNASeq-annotation-methods	0	0	0
easyRNASeq-class	0.000	0.004	0.001
easyRNASeq-correction-methods	0.000	0.000	0.001
easyRNASeq-coverage-methods	0	0	0
easyRNASeq-easyRNAseq	0.000	0.000	0.001
easyRNASeq-island-methods	0	0	0
easyRNASeq-package	0	0	0
easyRNASeq-summarization-methods	0	0	0
edgeR-methods	0	0	0
genomeIntervals-methods	0	0	0