Package: miRNATarget

Version: 0.99.1

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_0.99.1.tar.gz

StartedAt: 2012-06-21 14:58:45 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 15:00:28 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 103.0 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   'miRNATarget.Rnw' 
** testing if installed package can be loaded

* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.037	0.006	0.050
HS_refseq_to_affy_hc_g110	0.014	0.001	0.017
HS_refseq_to_affy_hg_focus	0.064	0.004	0.068
HS_refseq_to_affy_hg_u133_plus_2	0.216	0.010	0.227
HS_refseq_to_affy_hg_u133a	0.134	0.005	0.141
HS_refseq_to_affy_hg_u133a_2	0.134	0.005	0.139
HS_refseq_to_affy_hg_u133b	0.068	0.004	0.079
HS_refseq_to_affy_hg_u95a	0.086	0.005	0.092
HS_refseq_to_affy_hg_u95av2	0.080	0.004	0.084
HS_refseq_to_affy_hg_u95b	0.060	0.004	0.064
HS_refseq_to_affy_hg_u95c	0.036	0.002	0.038
HS_refseq_to_affy_hg_u95d	0.019	0.002	0.022
HS_refseq_to_affy_hg_u95e	0.034	0.002	0.037
HS_refseq_to_affy_huex_1_0_st_v2	3.622	0.105	3.766
HS_refseq_to_affy_hugene_1_0_st_v1	0.163	0.007	0.187
HS_refseq_to_affy_hugenefl	0.048	0.002	0.051
HS_refseq_to_affy_u133_x3p	0.454	0.014	0.471
HS_refseq_to_agilent_cgh_44b	0.042	0.002	0.045
HS_refseq_to_agilent_wholegenome	0.158	0.008	0.167
HS_refseq_to_canonical_transcript_stable_id	0.150	0.009	0.161
HS_refseq_to_ccds	0.113	0.007	0.123
HS_refseq_to_codelink	0.130	0.005	0.154
HS_refseq_to_embl	0.736	0.035	0.786
HS_refseq_to_ensembl_gene_id	0.149	0.007	0.157
HS_refseq_to_ensembl_peptide_id	0.187	0.009	0.200
HS_refseq_to_ensembl_transcript_id	0.198	0.008	0.209
HS_refseq_to_entrezgene	0.144	0.006	0.152
HS_refseq_to_hgnc_id	0.138	0.007	0.146
HS_refseq_to_hgnc_symbol	0.142	0.006	0.154
HS_refseq_to_hgnc_transcript_name	0.197	0.010	0.220
HS_refseq_to_illumina_humanht_12	0.185	0.009	0.196
HS_refseq_to_illumina_humanwg_6_v1	0.151	0.005	0.158
HS_refseq_to_illumina_humanwg_6_v2	0.147	0.008	0.155
HS_refseq_to_illumina_humanwg_6_v3	0.184	0.009	0.196
HS_refseq_to_interpro	0.460	0.016	0.481
HS_refseq_to_ipi	0.259	0.010	0.270
HS_refseq_to_merops	0.008	0.002	0.011
HS_refseq_to_pdb	0.097	0.005	0.104
HS_refseq_to_pfam	0.152	0.007	0.163
HS_refseq_to_phalanx_onearray	0.149	0.006	0.157
HS_refseq_to_protein_id	0.682	0.026	0.714
HS_refseq_to_refseq_dna	0.140	0.006	0.151
HS_refseq_to_refseq_genomic	0.002	0.001	0.004
HS_refseq_to_refseq_peptide	0.191	0.011	0.203
HS_refseq_to_rfam	0.006	0.002	0.008
HS_refseq_to_rfam_gene_name	0.003	0.002	0.005
HS_refseq_to_rfam_transcript_name	0.003	0.001	0.004
HS_refseq_to_smart	0.103	0.005	0.108
HS_refseq_to_tigrfam	0.010	0.001	0.012
HS_refseq_to_ucsc	0.177	0.010	0.188
HS_refseq_to_unigene	0.326	0.009	0.338
HS_refseq_to_uniprot_genename	0.201	0.008	0.214
HS_refseq_to_wikigene_name	0.137	0.006	0.144
MM_conv_id	0.007	0.001	0.008
MM_refseq_to_affy_mg_u74a	0.056	0.004	0.060
MM_refseq_to_affy_mg_u74av2	0.055	0.002	0.057
MM_refseq_to_affy_mg_u74b	0.040	0.002	0.043
MM_refseq_to_affy_mg_u74bv2	0.045	0.003	0.047
MM_refseq_to_affy_mg_u74c	0.013	0.002	0.016
MM_refseq_to_affy_mg_u74cv2	0.020	0.002	0.023
MM_refseq_to_affy_moe430a	0.115	0.006	0.121
MM_refseq_to_affy_moe430b	0.314	0.006	0.327
MM_refseq_to_affy_moex_1_0_st_v1	2.123	0.045	2.183
MM_refseq_to_affy_mogene_1_0_st_v1	0.135	0.005	0.140
MM_refseq_to_affy_mouse430_2	0.149	0.005	0.154
MM_refseq_to_affy_mouse430a_2	0.102	0.004	0.108
MM_refseq_to_affy_mu11ksuba	0.033	0.002	0.039
MM_refseq_to_affy_mu11ksubb	0.024	0.002	0.027
MM_refseq_to_agilent_wholegenome	0.125	0.005	0.130
MM_refseq_to_canonical_transcript_stable_id	0.120	0.005	0.125
MM_refseq_to_ccds	0.102	0.006	0.108
MM_refseq_to_codelink	0.101	0.005	0.110
MM_refseq_to_embl	0.461	0.015	0.480
MM_refseq_to_ensembl_gene_id	0.235	0.007	0.244
MM_refseq_to_ensembl_peptide_id	0.118	0.006	0.131
MM_refseq_to_ensembl_transcript_id	0.127	0.008	0.147
MM_refseq_to_entrezgene	0.116	0.005	0.122
MM_refseq_to_fantom	0.165	0.006	0.173
MM_refseq_to_illumina_mousewg_6_v1	0.303	0.006	0.310
MM_refseq_to_illumina_mousewg_6_v2	0.163	0.005	0.169
MM_refseq_to_interpro	0.510	0.011	0.522
MM_refseq_to_ipi	0.162	0.006	0.169
MM_refseq_to_merops	0.007	0.002	0.008
MM_refseq_to_mgi_id	0.112	0.006	0.121
MM_refseq_to_mgi_symbol	0.114	0.004	0.122
MM_refseq_to_mgi_transcript_name	0.118	0.005	0.124
MM_refseq_to_pdb	0.011	0.001	0.012
MM_refseq_to_pfam	0.117	0.004	0.123
MM_refseq_to_phalanx_onearray	0.104	0.005	0.114
MM_refseq_to_protein_id	0.425	0.016	0.444
MM_refseq_to_refseq_dna	0.097	0.004	0.102
MM_refseq_to_refseq_peptide	0.126	0.004	0.131
MM_refseq_to_rfam	0.003	0.000	0.003
MM_refseq_to_rfam_gene_name	0.003	0.001	0.004
MM_refseq_to_rfam_transcript_name	0.002	0.001	0.004
MM_refseq_to_smart	0.077	0.004	0.082
MM_refseq_to_tigrfam	0.008	0.002	0.010
MM_refseq_to_ucsc	0.103	0.004	0.109
MM_refseq_to_unigene	0.152	0.006	0.162
MM_refseq_to_uniprot_genename	0.148	0.005	0.153
MM_refseq_to_wikigene_name	0.117	0.005	0.123
TBL2	3.606	0.189	3.836
TBL2_HS	7.142	0.400	7.612
TBL2_MM	3.307	0.235	3.574
conv_id	0.006	0.001	0.007
id_conv	0.113	0.004	0.116