DNAcopy 1.18.0
Venkatraman E. Seshan
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/DNAcopy | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/DNAcopy.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DNAcopy/DESCRIPTION' ... OK
* this is package 'DNAcopy' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DNAcopy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'DNAcopy' ...
** libs
making DLL ...
gfortran -O3 -c cbsWtstats.f -o cbsWtstats.o
gfortran -O3 -c cbststats.f -o cbststats.o
gfortran -O3 -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -O3 -c changepoints.f -o changepoints.o
gfortran -O3 -c esegment.f -o esegment.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c flchoose.c -o flchoose.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c fphyper.c -o fphyper.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c fpnorm.c -o fpnorm.o
gfortran -O3 -c getbdry.f -o getbdry.o
gfortran -O3 -c prune.f -o prune.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rshared.c -o rshared.o
gfortran -O3 -c segmentp.f -o segmentp.o
gfortran -O3 -c tailprobs.f -o tailprobs.o
gcc -shared -s -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'DNAcopy'
Formats: text html latex example chm
CNA text html latex example chm
DNAcopy-internal text html latex chm
DNAcopy text html latex chm
coriell text html latex chm
cytoBand text html latex chm
exon.segment text html latex example chm
getbdry text html latex chm
plot.DNAcopy text html latex example chm
segment text html latex example chm
segments.p text html latex example chm
segments.summary text html latex example chm
smooth.CNA text html latex example chm
subset.CNA text html latex example chm
subset.DNAcopy text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\DNACOP~1.RCH\00_PKG~1\DNAcopy\chm\DNAcopy.chm
Compile time: 0 minutes, 0 seconds
15 Topics
30 Local links
1 Internet link
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\DNACOP~1.RCH\00_PKG~1\DNAcopy\chm\DNAcopy.chm, 36,012 bytes
Compression decreased file by 15,716 bytes.
** building package indices ...
** MD5 sums
* DONE (DNAcopy)