DNAcopy 1.18.0
Venkatraman E. Seshan
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/DNAcopy | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=DNAcopy.buildbin-libdir DNAcopy_1.18.0.tar.gz'
* Installing *source* package ‘DNAcopy’ ...
** libs
** arch - i386
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'DNAcopy'
Formats: text html latex example
CNA text html latex example
DNAcopy-internal text html latex
DNAcopy text html latex
coriell text html latex
cytoBand text html latex
exon.segment text html latex example
getbdry text html latex
plot.DNAcopy text html latex example
segment text html latex example
segments.p text html latex example
segments.summary text html latex example
smooth.CNA text html latex example
subset.CNA text html latex example
subset.DNAcopy text html latex
** building package indices ...
* DONE (DNAcopy)