KEGGgraph 1.1.0
Jitao David Zhang
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/KEGGgraph | | Last Changed Rev: 40061 / Revision: 42512 | | Last Changed Date: 2009-06-10 07:58:30 -0700 (Wed, 10 Jun 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/KEGGgraph.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGgraph/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGgraph' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KEGGgraph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.subtypeDisplay: no visible binding for global variable
'KEGGEdgeSubtype'
KEGGgraphLegend: no visible binding for global variable
'KEGGEdgeSubtype'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
Running 'kegg2graph.R'
Running 'testGraph.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'KEGGgraph' ...
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'graph'
The following object(s) are masked from package:XML :
addNode
** help
*** installing help indices
>>> Building/Updating help pages for package 'KEGGgraph'
Formats: text html latex example chm
KEGGEdge-class text html latex example chm
KEGGEdgeSubType-class text html latex example chm
KEGGEdgeSubtype text html latex example chm
KEGGGraphics-class text html latex example chm
KEGGGroup-class text html latex example chm
KEGGNode-class text html latex example chm
KEGGPathway-class text html latex example chm
KEGGPathwayInfo-class text html latex example chm
KEGGReaction-class text html latex example chm
KEGGpathway2Graph text html latex example chm
KEGGpathway2reactionGraph text html latex example chm
expandKEGGNode text html latex chm
expandKEGGPathway text html latex example chm
getDisplayName-methods text html latex example chm
getEntryID-methods text html latex example chm
getKEGGID-methods text html latex example chm
getKEGGgeneLink-methods text html latex example chm
getKEGGnodeData text html latex example chm
getKGMLurl text html latex example chm
getName-methods text html latex example chm
getNamedElement text html latex example chm
getPathwayInfo-methods text html latex example chm
getReactions-methods text html latex example chm
getRgraphvizEdgeNames text html latex example chm
getSubtype-methods text html latex example chm
getTitle-methods text html latex example chm
getType-methods text html latex example chm
getValue-methods text html latex chm
graphDensity text html latex example chm
isHomoList text html latex example chm
kgmlFileName2PathwayName text html latex chm
mergeGraphs text html latex chm
mergeKEGGgraphs text html latex example chm
neighborhood text html latex example chm
parseEntry text html latex chm
parseGraphics text html latex chm
parseKGML text html latex example chm
parseKGML2Graph text html latex example chm
parseKGMLexpandMaps text html latex chm
parsePathwayInfo text html latex chm
parseReaction text html latex chm
parseRelation text html latex chm
parseSubType text html latex chm
plotKEGGgraph text html latex example chm
pvalue2asterisk text html latex example chm
queryKEGGsubgraph text html latex example chm
randomSubGraph text html latex example chm
splitKEGGgroup text html latex example chm
subGraphByNodeType text html latex example chm
subKEGGgraph text html latex example chm
subtypeDisplay-methods text html latex chm
top text html latex chm
translateKEGGID2GeneID text html latex example chm
translateKEGGgraph text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\KEGGGR~1.RCH\00_PKG~1\KEGGGR~1\chm\KEGGgraph.chm
Compile time: 0 minutes, 1 second
55 Topics
304 Local links
27 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\KEGGGR~1.RCH\00_PKG~1\KEGGGR~1\chm\KEGGgraph.chm, 64,730 bytes
Compression decreased file by 105,077 bytes.
** building package indices ...
** MD5 sums
* DONE (KEGGgraph)