RNAither 1.4.2
Nora Rieber
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RNAither | | Last Changed Rev: 41188 / Revision: 42512 | | Last Changed Date: 2009-08-17 06:10:09 -0700 (Mon, 17 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/RNAither.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAither/DESCRIPTION' ... OK
* this is package 'RNAither' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAither' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'RNAither' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
** help
*** installing help indices
>>> Building/Updating help pages for package 'RNAither'
Formats: text html latex example chm
BScore text html latex example chm
DRQualControl text html latex example chm
LiWongRank text html latex example chm
MannWhitney text html latex example chm
RNAither-package text html latex chm
RankProduct text html latex example chm
SNRQualControl text html latex example chm
Ttest text html latex example chm
ZPRIMEQualControl text html latex example chm
ZScore text html latex example chm
ZScorePerScreen text html latex example chm
ZScorePlot text html latex example chm
ZScorePlotTwo text html latex example chm
channelPlot text html latex example chm
closestToZero text html latex example chm
compareHits text html latex example chm
compareReplicaPlates text html latex example chm
compareReplicateSD text html latex example chm
compareReplicateSDPerScreen text html latex example chm
compareReplicates text html latex example chm
controlDensity text html latex example chm
controlDensityPerPlate text html latex example chm
controlDensityPerScreen text html latex example chm
controlNorm text html latex example chm
createSubset text html latex example chm
dataset text html latex chm
datasetDrosophila text html latex chm
discardLabtek text html latex example chm
discardWells text html latex example chm
divNorm text html latex example chm
divideChannels text html latex example chm
eraseDataSetColumn text html latex example chm
findReplicates text html latex example chm
furthestFromZero text html latex example chm
generateDatasetFile text html latex example chm
generateRepMatNoFilter text html latex example chm
generateReplicateMat text html latex example chm
gseaAnalysis text html latex example chm
header text html latex chm
headerDrosophila text html latex chm
hitselectionPval text html latex example chm
hitselectionZscore text html latex example chm
hitselectionZscorePval text html latex example chm
incorporatepValVec text html latex example chm
indexSubset text html latex example chm
joinDatasetFiles text html latex example chm
joinDatasets text html latex example chm
lowessNorm text html latex example chm
mainAnalysis text html latex example chm
makeBoxplot4PlateType text html latex example chm
makeBoxplotControls text html latex example chm
makeBoxplotControlsPerPlate text html latex example chm
makeBoxplotControlsPerScreen text html latex example chm
makeBoxplotPerPlate text html latex example chm
makeBoxplotPerScreen text html latex example chm
multTestAdjust text html latex example chm
numCellQualControl text html latex example chm
orderGeneIDs text html latex example chm
pValVec1 text html latex chm
pValVec2 text html latex chm
percCellQualControl text html latex example chm
plotBar text html latex example chm
plotControlHisto text html latex example chm
plotControlHistoPerplate text html latex example chm
plotControlHistoPerscreen text html latex example chm
plotHisto text html latex example chm
plotHistoPerplate text html latex example chm
plotHistoPerscreen text html latex example chm
plotQQ text html latex example chm
plotQQperplate text html latex example chm
plotQQperscreen text html latex example chm
quantileNormalization text html latex example chm
replicatesCV text html latex example chm
replicatesSpearmancor text html latex example chm
rms text html latex example chm
saveDataset text html latex example chm
saveOldIntensityColumns text html latex example chm
savepValVec text html latex example chm
scoredDataset1 text html latex chm
scoredDataset2 text html latex chm
spatialDistrib text html latex example chm
spatialDistribHits text html latex example chm
subtractBackground text html latex example chm
sumChannels text html latex example chm
summarizeReps text html latex example chm
summarizeRepsNoFiltering text html latex example chm
trim text html latex example chm
varAdjust text html latex example chm
vennDiag text html latex example chm
volcanoPlot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\RNAITH~1.RCH\00_PKG~1\RNAither\chm\RNAither.chm
Compile time: 0 minutes, 1 second
91 Topics
499 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\RNAITH~1.RCH\00_PKG~1\RNAither\chm\RNAither.chm, 87,965 bytes
Compression decreased file by 199,271 bytes.
** building package indices ...
** MD5 sums
* DONE (RNAither)