RNAither 1.4.2
Nora Rieber
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RNAither | | Last Changed Rev: 41188 / Revision: 42512 | | Last Changed Date: 2009-08-17 06:10:09 -0700 (Mon, 17 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/RNAither.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAither/DESCRIPTION' ... OK
* this is package 'RNAither' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAither' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'RNAither' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
** help
*** installing help indices
>>> Building/Updating help pages for package 'RNAither'
Formats: text html latex example
BScore text html latex example
DRQualControl text html latex example
LiWongRank text html latex example
MannWhitney text html latex example
RNAither-package text html latex
RankProduct text html latex example
SNRQualControl text html latex example
Ttest text html latex example
ZPRIMEQualControl text html latex example
ZScore text html latex example
ZScorePerScreen text html latex example
ZScorePlot text html latex example
ZScorePlotTwo text html latex example
channelPlot text html latex example
closestToZero text html latex example
compareHits text html latex example
compareReplicaPlates text html latex example
compareReplicateSD text html latex example
compareReplicateSDPerScreen text html latex example
compareReplicates text html latex example
controlDensity text html latex example
controlDensityPerPlate text html latex example
controlDensityPerScreen text html latex example
controlNorm text html latex example
createSubset text html latex example
dataset text html latex
datasetDrosophila text html latex
discardLabtek text html latex example
discardWells text html latex example
divNorm text html latex example
divideChannels text html latex example
eraseDataSetColumn text html latex example
findReplicates text html latex example
furthestFromZero text html latex example
generateDatasetFile text html latex example
generateRepMatNoFilter text html latex example
generateReplicateMat text html latex example
gseaAnalysis text html latex example
header text html latex
headerDrosophila text html latex
hitselectionPval text html latex example
hitselectionZscore text html latex example
hitselectionZscorePval text html latex example
incorporatepValVec text html latex example
indexSubset text html latex example
joinDatasetFiles text html latex example
joinDatasets text html latex example
lowessNorm text html latex example
mainAnalysis text html latex example
makeBoxplot4PlateType text html latex example
makeBoxplotControls text html latex example
makeBoxplotControlsPerPlate text html latex example
makeBoxplotControlsPerScreen text html latex example
makeBoxplotPerPlate text html latex example
makeBoxplotPerScreen text html latex example
multTestAdjust text html latex example
numCellQualControl text html latex example
orderGeneIDs text html latex example
pValVec1 text html latex
pValVec2 text html latex
percCellQualControl text html latex example
plotBar text html latex example
plotControlHisto text html latex example
plotControlHistoPerplate text html latex example
plotControlHistoPerscreen text html latex example
plotHisto text html latex example
plotHistoPerplate text html latex example
plotHistoPerscreen text html latex example
plotQQ text html latex example
plotQQperplate text html latex example
plotQQperscreen text html latex example
quantileNormalization text html latex example
replicatesCV text html latex example
replicatesSpearmancor text html latex example
rms text html latex example
saveDataset text html latex example
saveOldIntensityColumns text html latex example
savepValVec text html latex example
scoredDataset1 text html latex
scoredDataset2 text html latex
spatialDistrib text html latex example
spatialDistribHits text html latex example
subtractBackground text html latex example
sumChannels text html latex example
summarizeReps text html latex example
summarizeRepsNoFiltering text html latex example
trim text html latex example
varAdjust text html latex example
vennDiag text html latex example
volcanoPlot text html latex example
** building package indices ...
* DONE (RNAither)