SNPchip 1.8.0
Robert Scharpf
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/SNPchip | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/SNPchip.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "summary" in "SNPchip"
Creating a new generic function for "plot" in "SNPchip"
** help
*** installing help indices
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example chm
HmmPredict-class text html latex example chm
ParESet-class text html latex example chm
ParSnpCallSet-class text html latex example chm
ParSnpCopyNumberSet-class text html latex example chm
ParSnpSet-class text html latex example chm
RatioSnpSet-class text html latex example chm
RatioSnpSet-methods text html latex chm
addFeatureData-method text html latex chm
alleleA text html latex chm
alleleB text html latex chm
centromere text html latex example chm
chromosome2integer text html latex chm
chromosomeAnnotation text html latex example chm
chromosomeSize text html latex example chm
coerce-methods text html latex chm
crlmmOut text html latex example chm
cytoband text html latex example chm
dbSnpId text html latex example chm
enzyme text html latex chm
featureData-accessors text html latex chm
fragmentLength text html latex chm
getPar text html latex chm
hapmap text html latex example chm
hmmPredict text html latex chm
plotCytoband text html latex example chm
plotPredictions text html latex example chm
plotSnp text html latex example chm
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
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sample.snpset text html latex example chm
Note: removing empty section \author in file 'selectSomeIndex.Rd'
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selectSomeIndex text html latex chm
show-methods text html latex chm
Note: removing empty section \value in file 'showSummary.Rd'
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Note: removing empty section \examples in file 'showSummary.Rd'
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Note: removing empty section \details in file 'showSummary.Rd'
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Note: removing empty section \examples in file 'showSummary.Rd'
showSummary text html latex chm
smoothSnp text html latex chm
snpPar text html latex example chm
snpset text html latex chm
summary-methods text html latex chm
updateObject-methods text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\SNPCHI~1.RCH\00_PKG~1\SNPchip\chm\SNPchip.chm
Compile time: 0 minutes, 1 second
37 Topics
170 Local links
1 Internet link
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\SNPCHI~1.RCH\00_PKG~1\SNPchip\chm\SNPchip.chm, 40,486 bytes
Compression decreased file by 68,913 bytes.
** building package indices ...
** MD5 sums
* DONE (SNPchip)