SNPchip 1.8.0
Robert Scharpf
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/SNPchip | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ OK ] | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package ‘SNPchip’ ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "summary" in "SNPchip"
Creating a new generic function for "plot" in "SNPchip"
** help
*** installing help indices
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example
HmmPredict-class text html latex example
ParESet-class text html latex example
ParSnpCallSet-class text html latex example
ParSnpCopyNumberSet-class text html latex example
ParSnpSet-class text html latex example
RatioSnpSet-class text html latex example
RatioSnpSet-methods text html latex
addFeatureData-method text html latex
alleleA text html latex
alleleB text html latex
centromere text html latex example
chromosome2integer text html latex
chromosomeAnnotation text html latex example
chromosomeSize text html latex example
coerce-methods text html latex
crlmmOut text html latex example
cytoband text html latex example
dbSnpId text html latex example
enzyme text html latex
featureData-accessors text html latex
fragmentLength text html latex
getPar text html latex
hapmap text html latex example
hmmPredict text html latex
plotCytoband text html latex example
plotPredictions text html latex example
plotSnp text html latex example
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
sample.snpset text html latex example
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
selectSomeIndex text html latex
show-methods text html latex
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
showSummary text html latex
smoothSnp text html latex
snpPar text html latex example
snpset text html latex
summary-methods text html latex
updateObject-methods text html latex
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
.calculateYlim.Rd
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SNPchip_1.8.0.tar.gz'