aCGH 1.18.1
Jane Fridlyand
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/aCGH | | Last Changed Rev: 42112 / Revision: 42512 | | Last Changed Date: 2009-10-01 16:44:04 -0700 (Thu, 01 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ OK ] | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'aCGH/DESCRIPTION' ... OK
* preparing 'aCGH':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package ‘aCGH’ ...
** libs
** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -g3 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c hmm.cpp -o hmm.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o aCGH.so hmm.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -g3 -I/usr/local/include -fPIC -g -O2 -c hmm.cpp -o hmm.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o aCGH.so hmm.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: splines
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'aCGH'
Formats: text html latex example
aCGH text html latex example
aCGH.process text html latex example
aCGH.read.Sprocs text html latex example
aCGH.test text html latex
clusterGenome text html latex example
colorectal text html latex example
computeSD.func text html latex
fga.func text html latex example
find.genomic.events text html latex
find.hmm.states text html latex example
findAber.func text html latex
findAmplif.func text html latex
findOutliers.func text html latex
findTrans.func text html latex
gainLoss text html latex example
heatmap text html latex example
human.chrom.info.Jul03 text html latex
human.chrom.info.May04 text html latex
impute.HMM text html latex example
impute.lowess text html latex example
mergeFunc text html latex
mergeLevels text html latex example
plotFreqStat text html latex example
plotGenome text html latex example
plotHmmStates text html latex example
plotSummaryProfile text html latex example
states.hmm.func text html latex
summarize.clones text html latex example
threshold.func text html latex example
** building package indices ...
* DONE (aCGH)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'aCGH_1.18.1.tar.gz'