edgeR 1.2.4
Mark Robinson , Davis McCarthy
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/edgeR | | Last Changed Rev: 40848 / Revision: 42512 | | Last Changed Date: 2009-07-26 06:43:33 -0700 (Sun, 26 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/edgeR.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'edgeR/DESCRIPTION' ... OK
* this is package 'edgeR' version '1.2.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'edgeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
Running 'mseq-Tests.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'edgeR' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'edgeR'
Formats: text html latex example chm
DGEList text html latex chm
EBList text html latex chm
Tu102 text html latex chm
alpha.approxeb text html latex example chm
approx.expected.info text html latex example chm
condLogLikDerDelta text html latex example chm
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estimatePs text html latex example chm
exactTestNB text html latex example chm
findMaxD2 text html latex example chm
getData text html latex example chm
interpolateHelper text html latex example chm
logLikDerP text html latex example chm
plotMA text html latex example chm
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tau2.0.objective text html latex example chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\EDGER~1.RCH\00_PKG~1\edgeR\chm\edgeR.chm
Compile time: 0 minutes, 0 seconds
23 Topics
51 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\EDGER~1.RCH\00_PKG~1\edgeR\chm\edgeR.chm, 35,290 bytes
Compression decreased file by 26,494 bytes.
** building package indices ...
** MD5 sums
* DONE (edgeR)