flowQ 1.4.0
F. Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowQ | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'flowQ/DESCRIPTION' ... OK
* preparing 'flowQ':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package ‘flowQ’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Attaching package: 'flowCore'
The following object(s) are masked from package:stats :
alias,
filter
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: KernSmooth
Loading required package: tools
Attaching package: 'latticeExtra'
The following object(s) are masked from package:flowViz :
ecdfplot
** help
*** installing help indices
>>> Building/Updating help pages for package 'flowQ'
Formats: text html latex example
aggregatorList-class text html latex example
binaryAggregator-class text html latex example
discreteAggregator-class text html latex example
evaluateProcess text html latex example
factorAggregator-class text html latex example
flowQ-package text html latex example
locateDuplicatedParameters text html latex example
normalizeSets text html latex example
numericAggregator-class text html latex example
outlier-class text html latex example
outlierResult-class text html latex example
outliers-methods text html latex
qData text html latex
qaAggregator-class text html latex example
qaGraph-class text html latex example
qaGraphList-class text html latex example
qaProcess-class text html latex example
qaProcess.2DStatsPlot text html latex example
qaProcess.BoundaryPlot text html latex example
qaProcess.DensityPlot text html latex example
qaProcess.ECDFPlot text html latex example
qaProcess.KLDistPlot text html latex example
qaProcess.cellnumber text html latex example
qaProcess.marginevents text html latex example
qaProcess.timeflow text html latex example
qaProcess.timeline text html latex example
qaProcessFrame-class text html latex example
qaProcessSummary-class text html latex
qaReport text html latex example
rangeAggregator-class text html latex example
stringAggregator-class text html latex example
validProcess text html latex
writeQAReport text html latex example
** building package indices ...
* DONE (flowQ)
* creating vignettes ... ERROR
Loading required package: outliers
Loading required package: lattice
Loading required package: flowViz
Loading required package: flowCore
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Attaching package: 'flowCore'
The following object(s) are masked from package:stats :
alias,
filter
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: mvoutlier
Loading required package: bioDist
Loading required package: KernSmooth
Loading required package: parody
Loading required package: RColorBrewer
Loading required package: latticeExtra
Attaching package: 'latticeExtra'
The following object(s) are masked from package:flowViz :
ecdfplot
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe's published PDF
**** specification.
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe's published PDF
**** specification.
Error: processing vignette 'DataQualityAssessment.Rnw' failed with diagnostics:
chunk 14 (label=displayBoundaryData)
Error in grid.Call("L_textBounds", as.graphicsAnnot(x$label), x$x, x$y, :
Polygon edge not found
In addition: Warning message:
In grid.Call("L_textBounds", as.graphicsAnnot(x$label), x$x, x$y, :
no font could be found for family "Arial"
Execution halted