flowQ 1.4.0
F. Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowQ | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/flowQ.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for 'efun' with
different formal arguments
normalizeSets : <anonymous>: no visible global function definition for
'warpSet'
qaProcess.2DStatsPlot: no visible binding for global variable 'Aliquot'
qaProcess.DensityPlot: no visible binding for global variable 'Aliquot'
qaProcess.ECDFPlot: no visible binding for global variable 'Aliquot'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'flowQ' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Attaching package: 'flowCore'
The following object(s) are masked from package:stats :
alias,
filter
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: KernSmooth
Loading required package: tools
Attaching package: 'latticeExtra'
The following object(s) are masked from package:flowViz :
ecdfplot
** help
*** installing help indices
>>> Building/Updating help pages for package 'flowQ'
Formats: text html latex example
aggregatorList-class text html latex example
binaryAggregator-class text html latex example
discreteAggregator-class text html latex example
evaluateProcess text html latex example
factorAggregator-class text html latex example
flowQ-package text html latex example
locateDuplicatedParameters text html latex example
normalizeSets text html latex example
numericAggregator-class text html latex example
outlier-class text html latex example
outlierResult-class text html latex example
outliers-methods text html latex
qData text html latex
qaAggregator-class text html latex example
qaGraph-class text html latex example
qaGraphList-class text html latex example
qaProcess-class text html latex example
qaProcess.2DStatsPlot text html latex example
qaProcess.BoundaryPlot text html latex example
qaProcess.DensityPlot text html latex example
qaProcess.ECDFPlot text html latex example
qaProcess.KLDistPlot text html latex example
qaProcess.cellnumber text html latex example
qaProcess.marginevents text html latex example
qaProcess.timeflow text html latex example
qaProcess.timeline text html latex example
qaProcessFrame-class text html latex example
qaProcessSummary-class text html latex
qaReport text html latex example
rangeAggregator-class text html latex example
stringAggregator-class text html latex example
validProcess text html latex
writeQAReport text html latex example
** building package indices ...
* DONE (flowQ)