genomeIntervals 1.0.1
Julien Gagneur
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/genomeIntervals | | Last Changed Rev: 40538 / Revision: 42512 | | Last Changed Date: 2009-07-07 08:14:34 -0700 (Tue, 07 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/genomeIntervals.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'genomeIntervals/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomeIntervals' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomeIntervals' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
Running ‘benchmarking-tests.R’
Comparing ‘benchmarking-tests.Rout’ to ‘benchmarking-tests.Rout.save’ ... OK
Running ‘consistency-tests.R’
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘genomeIntervals’ ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning in .findOrCopyClass(class2, classDef2, where, "subclass") :
Class "Intervals_virtual_or_numeric" is defined (with package slot "intervals") but no metadata object found to revise subclass information---not exported? Making a copy in package "genomeIntervals"
** help
*** installing help indices
>>> Building/Updating help pages for package 'genomeIntervals'
Formats: text html latex example
Genome_intervals-class text html latex example
Genome_intervals_stranded-class text html latex example
c.Genome_intervals text html latex example
core_annotated text html latex example
distance_to_nearest-methods text html latex example
gen_ints text html latex
genomeIntervals-package text html latex
getGffAttribute text html latex example
interval_overlap-methods text html latex example
interval_set_operations-methods text html latex example
parseGffAttributes text html latex example
readGFF3 text html latex example
** building package indices ...
* DONE (genomeIntervals)