hexbin 1.18.0
Nicholas Lewin-Koh
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/hexbin | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/hexbin.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for 'coords'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'hexbin' ...
** libs
making DLL ...
gfortran -O3 -c hbin.f -o hbin.o
gfortran -O3 -c hcell.f -o hcell.o
gfortran -O3 -c herode.f -o herode.o
gfortran -O3 -c hsm.f -o hsm.o
gcc -shared -s -o hexbin.dll tmp.def hbin.o hcell.o herode.o hsm.o -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
** help
*** installing help indices
>>> Building/Updating help pages for package 'hexbin'
Formats: text html latex example chm
Note: removing empty section \references in file 'NHANES.Rd'
Note: removing empty section \references in file 'NHANES.Rd'
NHANES text html latex example chm
colramp text html latex example chm
erode.hexbin text html latex example chm
getHMedian text html latex example chm
gplot.hexbin text html latex example chm
grid.hexagons text html latex example chm
grid.hexlegend text html latex example chm
hboxplot text html latex example chm
hcell2xy text html latex example chm
hcell2xyInt text html latex example chm
hdiffplot text html latex example chm
hexGraphPaper text html latex example chm
Note: removing empty section \examples in file 'hexList.Rd'
Note: removing empty section \examples in file 'hexList.Rd'
hexList text html latex chm
hexMA.loess text html latex example chm
hexTapply text html latex example chm
hexVP-class text html latex example chm
Note: removing empty section \examples in file 'hexVP.abline.Rd'
Note: removing empty section \examples in file 'hexVP.abline.Rd'
hexVP.abline text html latex chm
Note: removing empty section \details in file 'hexViewport.Rd'
Note: removing empty section \details in file 'hexViewport.Rd'
hexViewport text html latex example chm
hexbin text html latex example chm
hexbinplot text html latex example chm
hexplom text html latex example chm
hexpolygon text html latex example chm
hsmooth-methods text html latex chm
inout.hex text html latex chm
list2hexList text html latex chm
old-classes text html latex chm
optShape text html latex example chm
panel.hexboxplot text html latex example chm
Note: removing empty section \details in file 'panel.hexgrid.Rd'
Note: removing empty section \examples in file 'panel.hexgrid.Rd'
Note: removing empty section \details in file 'panel.hexgrid.Rd'
Note: removing empty section \examples in file 'panel.hexgrid.Rd'
panel.hexgrid text html latex chm
Note: removing empty section \details in file 'panel.hexloess.Rd'
Note: removing empty section \examples in file 'panel.hexloess.Rd'
Note: removing empty section \details in file 'panel.hexloess.Rd'
Note: removing empty section \examples in file 'panel.hexloess.Rd'
panel.hexloess text html latex chm
plotMAhex text html latex example chm
pushHexport text html latex chm
smooth.hexbin text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\HEXBIN~1.RCH\00_PKG~1\hexbin\chm\hexbin.chm
Compile time: 0 minutes, 0 seconds
34 Topics
263 Local links
2 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\HEXBIN~1.RCH\00_PKG~1\hexbin\chm\hexbin.chm, 81,183 bytes
Compression decreased file by 93,174 bytes.
** building package indices ...
** MD5 sums
* DONE (hexbin)