hexbin 1.18.0
Nicholas Lewin-Koh
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/hexbin | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/hexbin.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for ‘coords’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running ‘hdiffplot.R’
Comparing ‘hdiffplot.Rout’ to ‘hdiffplot.Rout.save’ ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running ‘hray.R’
Running ‘large.R’
Running ‘viewp-ex.R’
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘hexbin’ ...
** libs
** arch - i386
gfortran -arch i386 -fPIC -g -O2 -c hbin.f -o hbin.o
gfortran -arch i386 -fPIC -g -O2 -c hcell.f -o hcell.o
gfortran -arch i386 -fPIC -g -O2 -c herode.f -o herode.o
gfortran -arch i386 -fPIC -g -O2 -c hsm.f -o hsm.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran -arch ppc -fPIC -g -O2 -c hbin.f -o hbin.o
gfortran -arch ppc -fPIC -g -O2 -c hcell.f -o hcell.o
gfortran -arch ppc -fPIC -g -O2 -c herode.f -o herode.o
gfortran -arch ppc -fPIC -g -O2 -c hsm.f -o hsm.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
** help
*** installing help indices
>>> Building/Updating help pages for package 'hexbin'
Formats: text html latex example
Note: removing empty section \references in file 'NHANES.Rd'
NHANES text html latex example
colramp text html latex example
erode.hexbin text html latex example
getHMedian text html latex example
gplot.hexbin text html latex example
grid.hexagons text html latex example
grid.hexlegend text html latex example
hboxplot text html latex example
hcell2xy text html latex example
hcell2xyInt text html latex example
hdiffplot text html latex example
hexGraphPaper text html latex example
Note: removing empty section \examples in file 'hexList.Rd'
hexList text html latex
hexMA.loess text html latex example
hexTapply text html latex example
hexVP-class text html latex example
Note: removing empty section \examples in file 'hexVP.abline.Rd'
hexVP.abline text html latex
Note: removing empty section \details in file 'hexViewport.Rd'
hexViewport text html latex example
hexbin text html latex example
hexbinplot text html latex example
hexplom text html latex example
hexpolygon text html latex example
hsmooth-methods text html latex
inout.hex text html latex
list2hexList text html latex
old-classes text html latex
optShape text html latex example
panel.hexboxplot text html latex example
Note: removing empty section \details in file 'panel.hexgrid.Rd'
Note: removing empty section \examples in file 'panel.hexgrid.Rd'
panel.hexgrid text html latex
Note: removing empty section \details in file 'panel.hexloess.Rd'
Note: removing empty section \examples in file 'panel.hexloess.Rd'
panel.hexloess text html latex
plotMAhex text html latex example
pushHexport text html latex
smooth.hexbin text html latex example
** building package indices ...
* DONE (hexbin)