oligo 1.8.3
Benilton Carvalho
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oligo | | Last Changed Rev: 41241 / Revision: 42512 | | Last Changed Date: 2009-08-19 19:22:00 -0700 (Wed, 19 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘oligo’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o oligo.so baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o oligo.so baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o oligo.so baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.9/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o oligo.so baseProfile.o basecontent.o rma2.o rma_background2.o rma_common.o trimmed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'oligo'
Formats: text html latex example
IntensityMatrix-methods text html latex example
MAplot-methods text html latex
basecontent text html latex example
basicRMA text html latex example
boxplot text html latex
coordinates text html latex example
crlmm text html latex
getContainer text html latex
getCrlmmSummaries text html latex
getNgsColorsInfo text html latex
hist text html latex
image text html latex
justSNPRMA text html latex example
list.celfiles text html latex example
oligo-package text html latex
plotM-methods text html latex
read.celfiles text html latex example
read.xysfiles text html latex example
readSummaries text html latex
rma text html latex example
sequenceDesignMatrix text html latex example
snprma text html latex
** building package indices ...
* DONE (oligo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.8.3.tar.gz'