pickgene 1.16.0
Brian S. Yandell
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pickgene | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/pickgene.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pickgene/DESCRIPTION' ... OK
* this is package 'pickgene' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pickgene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lod.plot: possible error in oddsplot(exp(data[[x]]), exp(data[[y]]),
theta, col = col, xlab = xlab, ylab = ylab, chip = ""): unused
argument(s) (chip = "")
nloglik: no visible binding for global variable '.fit.xx'
nloglik: no visible binding for global variable '.fit.yy'
nploglik: no visible binding for global variable '.fit.xx'
nploglik: no visible binding for global variable '.fit.yy'
nploglik: no visible binding for global variable '.fit.zz'
s.check1: no visible global function definition for 'lod'
s.marg: no visible binding for global variable 'x'
shrinkplot: no visible global function definition for 's.fits'
shrinkplot: no visible binding for global variable 'lims'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'pickgene' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'pickgene'
Formats: text html latex example chm
Note: ignoring empty \keyword entries in file 'Simulation.pickgene.Rd'
Note: removing empty section \usage in file 'Simulation.pickgene.Rd'
Note: removing empty section \details in file 'Simulation.pickgene.Rd'
Note: ignoring empty \keyword entries in file 'Simulation.pickgene.Rd'
Note: removing empty section \usage in file 'Simulation.pickgene.Rd'
Note: removing empty section \details in file 'Simulation.pickgene.Rd'
Simulation.pickgene text html latex example chm
em.ggb text html latex example chm
model.pickgene text html latex example chm
oddsplot text html latex example chm
pickgene-internal text html latex chm
pickgene text html latex example chm
robustscale text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\PICKGE~1.RCH\00_PKG~1\pickgene\chm\pickgene.chm
Compile time: 0 minutes, 0 seconds
8 Topics
16 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\PICKGE~1.RCH\00_PKG~1\pickgene\chm\pickgene.chm, 30,365 bytes
Compression decreased file by 5,617 bytes.
** building package indices ...
** MD5 sums
* DONE (pickgene)