pickgene 1.16.0
Brian S. Yandell
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pickgene | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/pickgene.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'pickgene/DESCRIPTION' ... OK
* this is package 'pickgene' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pickgene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lod.plot: possible error in oddsplot(exp(data[[x]]), exp(data[[y]]),
theta, col = col, xlab = xlab, ylab = ylab, chip = ""): unused
argument(s) (chip = "")
nloglik: no visible binding for global variable ‘.fit.xx’
nloglik: no visible binding for global variable ‘.fit.yy’
nploglik: no visible binding for global variable ‘.fit.xx’
nploglik: no visible binding for global variable ‘.fit.yy’
nploglik: no visible binding for global variable ‘.fit.zz’
s.check1: no visible global function definition for ‘lod’
s.marg: no visible binding for global variable ‘x’
shrinkplot: no visible global function definition for ‘s.fits’
shrinkplot: no visible binding for global variable ‘lims’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘pickgene’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'pickgene'
Formats: text html latex example
Note: ignoring empty \keyword entries in file 'Simulation.pickgene.Rd'
Note: removing empty section \usage in file 'Simulation.pickgene.Rd'
Note: removing empty section \details in file 'Simulation.pickgene.Rd'
Simulation.pickgene text html latex example
em.ggb text html latex example
model.pickgene text html latex example
oddsplot text html latex example
pickgene-internal text html latex
pickgene text html latex example
robustscale text html latex example
** building package indices ...
* DONE (pickgene)