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Package 266/319HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 2.2.1
Michael Lawrence
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/rsbml
Last Changed Rev: 39231 / Revision: 42512
Last Changed Date: 2009-04-29 15:36:12 -0700 (Wed, 29 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: rsbml
Version: 2.2.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=rsbml.buildbin-libdir rsbml_2.2.1.tar.gz
StartedAt: 2009-10-20 19:14:28 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:15:05 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 37.5 seconds
RetCode: 0
Status: OK
PackageFile: rsbml_2.2.1.zip
PackageFileSize: 2.544 MiB

Command output

* Installing *source* package 'rsbml' ...

  Using auto-selected zip options '--use-zip-help'

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c StringMap.c -o StringMap.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/common.h:28,
                 from StringMap.c:52:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c check.c -o check.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c doc.c -o doc.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c dom.c -o dom.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c init.c -o init.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c io.c -o io.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c mathml.c -o mathml.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning 
mathml.c: In function 'rmathml_SEXP':
mathml.c:56: warning: unused variable 'closure'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3       -O3 -Wall  -std=gnu99 -c simulate.c -o simulate.o
gcc -shared -s -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o mathml.o simulate.o -LC:/libSBML-3.3.2-expat/win32/bin -lsbml -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'rsbml'
     Formats: text html latex example chm 
  AlgebraicRule-class               text    html    latex           chm
  AssignmentRule-class              text    html    latex           chm
  BoundingBox-class                 text    html    latex           chm
  CVTerm-class                      text    html    latex           chm
  Compartment-class                 text    html    latex           chm
  CompartmentGlyph-class            text    html    latex           chm
  CompartmentType-class             text    html    latex           chm
  CompartmentVolumeRule-class       text    html    latex           chm
  Constraint-class                  text    html    latex           chm
  CubicBezier-class                 text    html    latex           chm
  Curve-class                       text    html    latex           chm
  Delay-class                       text    html    latex           chm
  Describable-class                 text    html    latex           chm
  Dimensions-class                  text    html    latex           chm
  Event-class                       text    html    latex           chm
  EventAssignment-class             text    html    latex           chm
  Experiment-class                  text    html    latex           chm
  FunctionDefinition-class          text    html    latex           chm
  GraphicalObject-class             text    html    latex           chm
  InitialAssignment-class           text    html    latex           chm
  KineticLaw-class                  text    html    latex           chm
  Layout-class                      text    html    latex           chm
  LineSegment-class                 text    html    latex           chm
  Model-class                       text    html    latex           chm
  ModelCreator-class                text    html    latex           chm
  ModelHistory-class                text    html    latex           chm
  ModifierSpeciesReference-class    text    html    latex           chm
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  Point-class                       text    html    latex           chm
  RateRule-class                    text    html    latex           chm
  Reaction-class                    text    html    latex           chm
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  Rule-class                        text    html    latex           chm
  SBML-class                        text    html    latex   example chm
  SBMLDocument-class                text    html    latex   example chm
  SBMLProblem-class                 text    html    latex           chm
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  SBase-class                       text    html    latex           chm
  SOSDesign-class                   text    html    latex           chm
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  SOSResult-class                   text    html    latex           chm
  SOSSubject-class                  text    html    latex           chm
  SimpleSpeciesReference-class      text    html    latex           chm
  Species-class                     text    html    latex           chm
  SpeciesConcentrationRule-class    text    html    latex           chm
  SpeciesGlyph-class                text    html    latex           chm
  SpeciesReference-class            text    html    latex           chm
  SpeciesReferenceGlyph-class       text    html    latex           chm
  SpeciesType-class                 text    html    latex           chm
  StoichiometryMath-class           text    html    latex           chm
  TextGlyph-class                   text    html    latex           chm
  Trigger-class                     text    html    latex           chm
  Unit-class                        text    html    latex           chm
  UnitDefinition-class              text    html    latex           chm
  math                              text    html    latex           chm
  read                              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpoFMXuv\R.INSTALL678418be\rsbml\chm\rsbml.chm





Compile time: 0 minutes, 2 seconds

59	Topics

1,014	Local links

52	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpoFMXuv\R.INSTALL678418be\rsbml\chm\rsbml.chm, 85,328 bytes

Compression decreased file by 361,185 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'rsbml' as rsbml_2.2.1.zip
* DONE (rsbml)