rsbml 2.2.1
Michael Lawrence
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/rsbml | | Last Changed Rev: 39231 / Revision: 42512 | | Last Changed Date: 2009-04-29 15:36:12 -0700 (Wed, 29 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'rsbml' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c StringMap.c -o StringMap.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/common.h:28,
from StringMap.c:52:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c check.c -o check.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c doc.c -o doc.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c dom.c -o dom.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c graph.c -o graph.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c init.c -o init.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c io.c -o io.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c mathml.c -o mathml.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
from rsbml.h:4,
from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61: warning: ignoring #pragma warning
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70: warning: ignoring #pragma warning
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
from rsbml.h:4,
from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65: warning: ignoring #pragma warning
mathml.c: In function 'rmathml_SEXP':
mathml.c:56: warning: unused variable 'closure'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -Ie:/biocbld/bbs-2.4-bioc/R/include -DLIBSBML3 -O3 -Wall -std=gnu99 -c simulate.c -o simulate.o
gcc -shared -s -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o mathml.o simulate.o -LC:/libSBML-3.3.2-expat/win32/bin -lsbml -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'rsbml'
Formats: text html latex example chm
AlgebraicRule-class text html latex chm
AssignmentRule-class text html latex chm
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SimpleSpeciesReference-class text html latex chm
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SpeciesType-class text html latex chm
StoichiometryMath-class text html latex chm
TextGlyph-class text html latex chm
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math text html latex chm
read text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\rsbml\chm\rsbml.chm
Compile time: 0 minutes, 2 seconds
59 Topics
1,014 Local links
52 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\rsbml\chm\rsbml.chm, 85,326 bytes
Compression decreased file by 361,187 bytes.
** building package indices ...
** MD5 sums
* DONE (rsbml)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rsbml_2.2.1.tar.gz'