sigPathway 1.12.1
Weil Lai
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/sigPathway | | Last Changed Rev: 41184 / Revision: 42512 | | Last Changed Date: 2009-08-15 10:51:48 -0700 (Sat, 15 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'sigPathway/DESCRIPTION' ... OK
* preparing 'sigPathway':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'sigPathway' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_probe_stat.c -o calc_probe_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_weights.c -o calc_weights.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c matrix_fn.c -o matrix_fn.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c permute.c -o permute.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c shuffle.c -o shuffle.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c sigPathway.c -o sigPathway.o
gcc -shared -s -o sigPathway.dll tmp.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.4-bioc/R/bin -lRblas -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'sigPathway'
Formats: text html latex example chm
MuscleExample text html latex chm
calcTNullFast text html latex chm
calcTStatFast text html latex example chm
calculate.GSEA text html latex chm
calculate.NGSk text html latex example chm
calculatePathwayStatistics text html latex example chm
estimateNumPerm text html latex example chm
getPathwayStatistics.NGSk text html latex chm
getPathwayStatistics text html latex chm
importGeneSets text html latex chm
rankPathways.NGSk text html latex chm
rankPathways text html latex chm
runSigPathway text html latex example chm
selectGeneSets text html latex chm
writeSigPathway text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\sigPathway\chm\sigPathway.chm
Compile time: 0 minutes, 1 second
16 Topics
39 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\sigPathway\chm\sigPathway.chm, 39,567 bytes
Compression decreased file by 31,996 bytes.
** building package indices ...
** MD5 sums
* DONE (sigPathway)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
file 'sigPathway/src/Makevars' had non-LF line endings
* checking for empty or unneeded directories
* building 'sigPathway_1.12.1.tar.gz'