sigPathway 1.12.1
Weil Lai
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/sigPathway | | Last Changed Rev: 41184 / Revision: 42512 | | Last Changed Date: 2009-08-15 10:51:48 -0700 (Sat, 15 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/sigPathway.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sigPathway/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sigPathway' version '1.12.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sigPathway' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 1 marked Latin-1 string(s)
Portable packages use only ASCII characters in their datasets.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'sigPathway' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_probe_stat.c -o calc_probe_stat.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c calc_weights.c -o calc_weights.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c matrix_fn.c -o matrix_fn.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c permute.c -o permute.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c shuffle.c -o shuffle.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c sigPathway.c -o sigPathway.o
gcc -shared -s -o sigPathway.dll tmp.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.4-bioc/R/bin -lRblas -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'sigPathway'
Formats: text html latex example chm
MuscleExample text html latex chm
calcTNullFast text html latex chm
calcTStatFast text html latex example chm
calculate.GSEA text html latex chm
calculate.NGSk text html latex example chm
calculatePathwayStatistics text html latex example chm
estimateNumPerm text html latex example chm
getPathwayStatistics.NGSk text html latex chm
getPathwayStatistics text html latex chm
importGeneSets text html latex chm
rankPathways.NGSk text html latex chm
rankPathways text html latex chm
runSigPathway text html latex example chm
selectGeneSets text html latex chm
writeSigPathway text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\SIGPAT~1.RCH\00_PKG~1\SIGPAT~1\chm\sigPathway.chm
Compile time: 0 minutes, 0 seconds
16 Topics
39 Local links
11 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\SIGPAT~1.RCH\00_PKG~1\SIGPAT~1\chm\sigPathway.chm, 39,567 bytes
Compression decreased file by 31,996 bytes.
** building package indices ...
** MD5 sums
* DONE (sigPathway)