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Package 305/319HostnameOS / ArchBUILDCHECKBUILD BIN
topGO 1.12.0
Adrian Alexa
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/topGO
Last Changed Rev: 39043 / Revision: 42512
Last Changed Date: 2009-04-21 16:07:55 -0700 (Tue, 21 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: topGO
Version: 1.12.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build topGO
StartedAt: 2009-10-20 15:02:46 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:04:56 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 129.3 seconds
RetCode: 0
Status: OK
PackageFile: topGO_1.12.0.tar.gz
PackageFileSize: 1.025 MiB

Command output

* checking for file 'topGO/DESCRIPTION' ... OK
* preparing 'topGO':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Creating a new generic function for "print" in "topGO"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'topGO'
     Formats: text html latex example chm 
  GOTests                           text    html    latex           chm
  GOdata                            text    html    latex   example chm
  annFUN                            text    html    latex   example chm
  classicCount-class                text    html    latex   example chm
  classicExpr-class                 text    html    latex   example chm
  classicScore-class                text    html    latex   example chm
  dagFunctions                      text    html    latex   example chm
  diagnosticMethods                 text    html    latex   example chm
  elimCount-class                   text    html    latex           chm
  elimExpr-class                    text    html    latex   example chm
  elimScore-class                   text    html    latex   example chm
  geneList                          text    html    latex   example chm
  getPvalues                        text    html    latex   example chm
  getSigGroups                      text    html    latex   example chm
  groupGOTerms                      text    html    latex   example chm
  groupStats-class                  text    html    latex           chm
  inducedGraph                      text    html    latex   example chm
  parentChild-class                 text    html    latex   example chm
  printGraph-methods                text    html    latex   example chm
  topGO-package                     text    html    latex           chm
  topGOdata-class                   text    html    latex   example chm
  topGOresult-class                 text    html    latex   example chm
  weightCount-class                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\topGO\chm\topGO.chm





Compile time: 0 minutes, 4 seconds

24	Topics

422	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\topGO\chm\topGO.chm, 56,522 bytes

Compression decreased file by 142,284 bytes.

** building package indices ...
** MD5 sums
* DONE (topGO)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'topGO_1.12.0.tar.gz'