topGO 1.12.0
Adrian Alexa
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/topGO | | Last Changed Rev: 39043 / Revision: 42512 | | Last Changed Date: 2009-04-21 16:07:55 -0700 (Tue, 21 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/topGO.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'topGO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'topGO' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'topGO' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
Creating a new generic function for "print" in "topGO"
** help
*** installing help indices
>>> Building/Updating help pages for package 'topGO'
Formats: text html latex example chm
GOTests text html latex chm
GOdata text html latex example chm
annFUN text html latex example chm
classicCount-class text html latex example chm
classicExpr-class text html latex example chm
classicScore-class text html latex example chm
dagFunctions text html latex example chm
diagnosticMethods text html latex example chm
elimCount-class text html latex chm
elimExpr-class text html latex example chm
elimScore-class text html latex example chm
geneList text html latex example chm
getPvalues text html latex example chm
getSigGroups text html latex example chm
groupGOTerms text html latex example chm
groupStats-class text html latex chm
inducedGraph text html latex example chm
parentChild-class text html latex example chm
printGraph-methods text html latex example chm
topGO-package text html latex chm
topGOdata-class text html latex example chm
topGOresult-class text html latex example chm
weightCount-class text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\TOPGO~1.RCH\00_PKG~1\topGO\chm\topGO.chm
Compile time: 0 minutes, 2 seconds
24 Topics
422 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\TOPGO~1.RCH\00_PKG~1\topGO\chm\topGO.chm, 56,520 bytes
Compression decreased file by 142,286 bytes.
** building package indices ...
** MD5 sums
* DONE (topGO)