BufferedMatrixMethods 1.12.0
B. M. Bolstad
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/BufferedMatrixMethods | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BufferedMatrix.justRMA: possible error in gsub("^/?([^/]*/)*", "",
unlist(filenames), extended = TRUE): unused argument(s) (extended =
TRUE)
BufferedMatrix.read.celfiles: possible error in gsub("^/?([^/]*/)*",
"", unlist(filenames), extended = TRUE): unused argument(s) (extended
= TRUE)
BufferedMatrix.read.probematrix: possible error in gsub("^/?([^/]*/)*",
"", unlist(filenames), extended = TRUE): unused argument(s) (extended
= TRUE)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'BufferedMatrixMethods' ...
** libs
making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/BufferedMatrix/include" -O2 -Wall -std=gnu99 -c init_package.c -o init_package.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -I"D:/biocbld/bbs-2.6-bioc/R/library/BufferedMatrix/include" -O2 -Wall -std=gnu99 -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: 'min' defined but not used
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck/BufferedMatrixMethods/libs/x64
... done
** R
** preparing package for lazy loading
Attaching package: 'BufferedMatrix'
The following object(s) are masked from 'package:base':
colMeans, colSums, rowMeans, rowSums
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (BufferedMatrixMethods)