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Package 59/389HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.12.0
B. M. Bolstad
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BufferedMatrixMethods
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings BufferedMatrixMethods_1.12.0.tar.gz
StartedAt: 2010-10-04 16:13:49 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 16:14:17 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 27.9 seconds
RetCode: 0
Status:  OK 
CheckDir: BufferedMatrixMethods.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BufferedMatrix.justRMA: possible error in gsub("^/?([^/]*/)*", "",
  unlist(filenames), extended = TRUE): unused argument(s) (extended =
  TRUE)
BufferedMatrix.read.celfiles: possible error in gsub("^/?([^/]*/)*",
  "", unlist(filenames), extended = TRUE): unused argument(s) (extended
  = TRUE)
BufferedMatrix.read.probematrix: possible error in gsub("^/?([^/]*/)*",
  "", unlist(filenames), extended = TRUE): unused argument(s) (extended
  = TRUE)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

BufferedMatrixMethods.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘BufferedMatrixMethods’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck/BufferedMatrixMethods/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck/BufferedMatrixMethods/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.11/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.6-bioc/meat/BufferedMatrixMethods.Rcheck/BufferedMatrixMethods/libs/x86_64
** R
** preparing package for lazy loading

Attaching package: 'BufferedMatrix'

The following object(s) are masked from 'package:base':

    colMeans, colSums, rowMeans, rowSums

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BufferedMatrixMethods)