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Package 121/419 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
edgeR 2.0.5 Mark Robinson
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ OK ] | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Package: edgeR |
Version: 2.0.5 |
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings edgeR_2.0.5.tar.gz |
StartedAt: 2011-03-31 07:33:01 -0700 (Thu, 31 Mar 2011) |
EndedAt: 2011-03-31 07:34:45 -0700 (Thu, 31 Mar 2011) |
EllapsedTime: 103.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: edgeR.Rcheck |
Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/edgeR.Rcheck' * using R version 2.12.2 (2011-02-25) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'edgeR/DESCRIPTION' ... OK * this is package 'edgeR' version '2.0.5' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'edgeR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... Running 'mseq-Tests.R' OK * checking package vignettes in 'inst/doc' ... SKIPPED * checking PDF version of manual ... OK
edgeR.Rcheck/00install.out:
* installing *source* package 'edgeR' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (edgeR)
edgeR.Rcheck/edgeR-Ex.timings:
name | user | system | elapsed | |
DGEList | 0.01 | 0.00 | 0.02 | |
approx.expected.info | 0.10 | 0.00 | 0.09 | |
betaApproxNBTest | 0 | 0 | 0 | |
calcNormFactors | 0 | 0 | 0 | |
commonCondLogLikDerDelta | 0.01 | 0.00 | 0.02 | |
condLogLikDerDelta | 0 | 0 | 0 | |
condLogLikDerSize | 0 | 0 | 0 | |
dglmStdResid | 0.06 | 0.00 | 0.06 | |
dim | 0 | 0 | 0 | |
equalizeLibSizes | 0.18 | 0.00 | 0.17 | |
estimateCRDisp | 1.86 | 0.00 | 1.86 | |
estimateCommonDisp | 0.06 | 0.00 | 0.06 | |
estimatePs | 0.01 | 0.00 | 0.02 | |
estimateSmoothing | 0.04 | 0.00 | 0.03 | |
estimateTagwiseDisp | 0.18 | 0.00 | 0.19 | |
exactTest | 0.05 | 0.00 | 0.05 | |
getCounts | 0 | 0 | 0 | |
glmfit | 0.04 | 0.00 | 0.05 | |
goodTuring | 0.02 | 0.00 | 0.01 | |
logLikDerP | 0 | 0 | 0 | |
maPlot | 0.03 | 0.00 | 0.03 | |
meanvar | 6 | 0 | 6 | |
mglm | 0.03 | 0.00 | 0.04 | |
plotMDS.dge | 7.70 | 0.01 | 7.71 | |
plotSmear | 0.8 | 0.0 | 0.8 | |
q2qnbinom | 0.13 | 0.00 | 0.13 | |
readDGE | 0 | 0 | 0 | |
splitIntoGroups | 0 | 0 | 0 | |
subsetting | 0.06 | 0.02 | 0.07 | |
topTags | 0.06 | 0.00 | 0.07 | |
weightedComLik | 0.03 | 0.00 | 0.03 | |
weightedCondLogLikDerDelta | 0 | 0 | 0 | |