Package: RTools4TB

Version: 1.9.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings RTools4TB_1.9.0.tar.gz

StartedAt: 2011-05-07 15:28:43 -0700 (Sat, 07 May 2011)

EndedAt: 2011-05-07 15:29:37 -0700 (Sat, 07 May 2011)

EllapsedTime: 53.6 seconds

RetCode: 0

Status:  OK

CheckDir: RTools4TB.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/RTools4TB.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTools4TB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTools4TB' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RTools4TB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'RTools4TB' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c dbf.c -o dbf.o
gcc -shared -s -static-libgcc -o RTools4TB.dll tmp.def dbf.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/RTools4TB.Rcheck/RTools4TB/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RTools4TB.Rnw' 
** testing if installed package can be loaded

* DONE (RTools4TB)

name	user	system	elapsed
DBFMCL	0	0	0
DBFMCLresult-class	0.01	0.00	0.02
annotationList	0.05	0.00	0.05
colorScale	0	0	0
createGraph4BioC	0	0	0
createSignatures4TB	0	0	0
doNormalScore	0.02	0.00	0.01
doRankTransformation	0	0	0
getExpressionMatrix	0	0	0
getSignatures	0	0	0
getTBInfo	0	0	0
heatmapFromCDT	0	0	0
plotGeneExpProfiles	0	0	0
writeDBFMCLresult	0	0	0