| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L [M] N O P Q R S T U V W X Y Z |
| Package 309/479 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| MSnbase 1.1.17 Laurent Gatto
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |||||
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK | |||||
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK | |||||
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ OK ] | OK | |||||
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: MSnbase |
| Version: 1.1.17 |
| Command: mkdir MSnbase.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MSnbase.buildbin-libdir MSnbase_1.1.17.tar.gz >MSnbase-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=MSnbase.buildbin-libdir --install="check:MSnbase-install.out" --force-multiarch --no-vignettes --timings MSnbase_1.1.17.tar.gz && mv MSnbase.buildbin-libdir/* MSnbase.Rcheck/ && rmdir MSnbase.buildbin-libdir |
| StartedAt: 2011-07-07 05:43:09 -0700 (Thu, 07 Jul 2011) |
| EndedAt: 2011-07-07 05:49:08 -0700 (Thu, 07 Jul 2011) |
| EllapsedTime: 358.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MSnbase.Rcheck |
| Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/MSnbase.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSnbase/DESCRIPTION' ... OK
* this is package 'MSnbase' version '1.1.17'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MSnbase' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
Note: significantly better compression could be obtained
by using tools::resaveRdaFiles() or R CMD build --resave-data
old_size new_size compress
itraqdata.RData 1.2Mb 356Kb xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
Running 'test-all.R'
OK
** running tests for arch 'x64'
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
MSnbase.Rcheck/00install.out:
install for i386
* installing *source* package 'MSnbase' ...
** R
** data
** moving datasets to lazyload DB
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Creating a generic function for "plot" from package "graphics" in package "MSnbase"
** inst
** preparing package for lazy loading
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-07-07 05:43:18", when none found
Loading required package: reshape
Loading required package: plyr
Attaching package: 'reshape'
The following object(s) are masked from 'package:plyr':
rename, round_any
Loading required package: grid
Loading required package: proto
Creating a generic function for "plot" from package "graphics" in package "MSnbase"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'MSnbase-demo.Rnw'
'MSnbase-development.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'MSnbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnbase' as MSnbase_1.1.17.zip
* DONE (MSnbase)
MSnbase.Rcheck/MSnbase-Ex.timings:
| name | user | system | elapsed | |
| MSnExp-class | 0.51 | 0.02 | 0.53 | |
| MSnProcess-class | 0 | 0 | 0 | |
| MSnSet-class | 0.80 | 0.01 | 0.81 | |
| NAnnotatedDataFrame-class | 0.03 | 0.00 | 0.04 | |
| ReporterIons-class | 0.01 | 0.00 | 0.01 | |
| TMT6 | 0.02 | 0.00 | 0.02 | |
| clean-methods | 0.5 | 0.0 | 0.5 | |
| combineFeatures | 0.76 | 0.00 | 0.76 | |
| extractPrecSpectra-methods | 0.36 | 0.00 | 0.36 | |
| extractSpectra-methods | 0.38 | 0.00 | 0.37 | |
| formatRt | 0 | 0 | 0 | |
| iTRAQ4 | 0.01 | 0.00 | 0.02 | |
| itraqdata | 0.49 | 0.00 | 0.48 | |
| normalise-methods | 3.93 | 0.03 | 4.12 | |
| pSet-class | 0 | 0 | 0 | |
| plot-methods | 4.35 | 0.00 | 4.35 | |
| plot2d-methods | 2.89 | 0.02 | 2.91 | |
| plotDensity-methods | 3.05 | 0.00 | 3.05 | |
| plotMzDelta-methods | 25.85 | 0.73 | 26.59 | |
| precSelection | 0.06 | 0.02 | 0.07 | |
| purityCorrect-methods | 0.86 | 0.01 | 0.88 | |
| quantify-methods | 0.85 | 0.02 | 0.85 | |
| readIspyData | 0 | 0 | 0 | |
| readMzXMLData | 0.42 | 0.00 | 0.43 | |
| removePeaks-methods | 0.53 | 0.00 | 0.53 | |
| removeReporters-methods | 3.24 | 0.00 | 3.24 | |
| trimMz-methods | 0.42 | 0.00 | 0.42 | |