RcwlPipelines 1.1.13
Qiang Hu
| Snapshot Date: 2019-10-20 17:01:46 -0400 (Sun, 20 Oct 2019) |
| URL: https://git.bioconductor.org/packages/RcwlPipelines |
| Branch: master |
| Last Commit: 84405e7 |
| Last Changed Date: 2019-10-11 15:09:15 -0400 (Fri, 11 Oct 2019) |
| malbec1 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### chmod a+r RcwlPipelines -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RcwlPipelines
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* checking for file 'RcwlPipelines/DESCRIPTION' ... OK
* preparing 'RcwlPipelines':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'RcwlPipelines.Rmd' using rmarkdown
Loading required package: Rcwl
Loading required package: yaml
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Registered S3 method overwritten by 'R.oo':
method from
throw.default R.methodsS3
c:\python27\lib\site-packages\cwltool\__init__.py:17: CWLToolDeprecationWarning:
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020.
Please upgrade your Python as the Python 2.7 version of cwltool won't be
maintained after that date.
""", category=CWLToolDeprecationWarning)
Loading required package: BiocFileCache
Loading required package: dbplyr
Quitting from lines 48-50 (RcwlPipelines.Rmd)
Quitting from lines 48-50 (RcwlPipelines.Rmd)
Error: processing vignette 'RcwlPipelines.Rmd' failed with diagnostics:
object 'con' not found
--- failed re-building 'RcwlPipelines.Rmd'
SUMMARY: processing the following file failed:
'RcwlPipelines.Rmd'
Error: Vignette re-building failed.
Execution halted