Shuyu Zheng
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/synergyfinder |
| Branch: RELEASE_3_10 |
| Last Commit: a09d792 |
| Last Changed Date: 2020-03-17 04:50:38 -0400 (Tue, 17 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:16 -0400 (Wed, 15 Apr 2020).
| Package 1699/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| synergyfinder 2.0.12 Shuyu Zheng
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: synergyfinder |
| Version: 2.0.12 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/synergyfinder_2.0.12.tar.gz && rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.0.12.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL synergyfinder_2.0.12.zip && rm synergyfinder_2.0.12.tar.gz synergyfinder_2.0.12.zip |
| StartedAt: 2020-04-14 20:22:43 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:23:07 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 24.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/synergyfinder_2.0.12.tar.gz && rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.0.12.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL synergyfinder_2.0.12.zip && rm synergyfinder_2.0.12.tar.gz synergyfinder_2.0.12.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 50636 100 50636 0 0 769k 0 --:--:-- --:--:-- --:--:-- 824k
install for i386
* installing *source* package 'synergyfinder' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c covariance.c -o covariance.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c kriging.c -o kriging.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c synergyfinder_init.c -o synergyfinder_init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/synergyfinder.buildbin-libdir/00LOCK-synergyfinder/00new/synergyfinder/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'synergyfinder'
finding HTML links ... done
AddNoise html
Bliss html
CalculateSynergy html
CorrectBaseLine html
ExtractSingleDrug html
FindModelType html
FitDoseResponse html
HSA html
ImputeNA html
Loewe html
PlotDoseResponse html
PlotSynergy html
ReshapeData html
ZIP html
dot-ExtendedScores html
kriging html
mathews_screening_data html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'synergyfinder' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c covariance.c -o covariance.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c kriging.c -o kriging.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c synergyfinder_init.c -o synergyfinder_init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/synergyfinder.buildbin-libdir/synergyfinder/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synergyfinder' as synergyfinder_2.0.12.zip
* DONE (synergyfinder)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'synergyfinder' successfully unpacked and MD5 sums checked