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###
### Running command:
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###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no rhdf5_2.34.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'rhdf5/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rhdf5' version '2.34.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rhdf5' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    libs   7.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package 'rhdf5' is not installed for 'arch = i386'
Execution halted
** DONE

Status: 1 ERROR, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00check.log'
for details.

* installing *source* package 'rhdf5' ...
** using staged installation
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5A.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5D.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5E.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5F.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5G.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5I.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5L.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5O.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5P.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5S.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5T.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5Z.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5constants.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/HandleList.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/HandleListWrap.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/external_filters.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5dump.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5ls.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5testLock.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5writeDataFrame.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/printdatatype.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/utils.o: file format not recognized
C:\rtools40\mingw32\bin\nm.exe: C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/wrap.o: file format not recognized
There were 24 warnings (use warnings() to see them)
installing to C:/Users/biocbuild/bbs-3.12-bioc-longtests/meat/rhdf5.Rcheck/00LOCK-rhdf5/00new/rhdf5/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5)