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This page was generated on 2022-04-13 12:05:51 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Rgin on nebbiolo2


To the developers/maintainers of the Rgin package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rgin.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1591/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rgin 1.14.0  (landing page)
Hector Climente-Gonzalez
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Rgin
git_branch: RELEASE_3_14
git_last_commit: c34f8cb
git_last_commit_date: 2021-10-26 12:42:01 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: Rgin
Version: 1.14.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL Rgin
StartedAt: 2022-04-12 03:15:20 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 03:15:35 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 15.3 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL Rgin
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘Rgin’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppEigen/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Rgin-init.c -o Rgin-init.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppEigen/include' -I/usr/local/include  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -DAS_GINLIB -DAS_RGINLIB -I./include -I./lib `/home/biocbuild/bbs-3.14-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -lz -fpic  -g -O2  -Wall -c src/feature_selection/feature_selector.cc -o src/feature_selection/feature_selector.o
In file included from ./include/gin/feature_selection/scones.h:8,
                 from src/feature_selection/feature_selector.cc:9:
./include/gin/globals.h:60:10: fatal error: Rcpp.h: No such file or directory
   60 | #include "Rcpp.h"
      |          ^~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.14-bioc/R/etc/Makeconf:173: src/feature_selection/feature_selector.o] Error 1
ERROR: compilation failed for package ‘Rgin’
* removing ‘/home/biocbuild/bbs-3.14-bioc/R/library/Rgin’