| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Rgin package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rgin.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1591/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rgin 1.14.0 (landing page) Hector Climente-Gonzalez
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: Rgin |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Rgin_1.14.0.tar.gz && rm -rf Rgin.buildbin-libdir && mkdir Rgin.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rgin.buildbin-libdir Rgin_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Rgin_1.14.0.zip && rm Rgin_1.14.0.tar.gz Rgin_1.14.0.zip |
| StartedAt: 2022-04-12 04:22:13 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:25:00 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 167.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Rgin_1.14.0.tar.gz && rm -rf Rgin.buildbin-libdir && mkdir Rgin.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rgin.buildbin-libdir Rgin_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Rgin_1.14.0.zip && rm Rgin_1.14.0.tar.gz Rgin_1.14.0.zip
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install for i386
* installing *source* package 'Rgin' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppEigen/include' -I"C:/extsoft/include" -D_LARGEFILE64_SOURCE -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rgin-init.c -o Rgin-init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppEigen/include' -I"C:/extsoft/include" -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -DAS_GINLIB -DAS_RGINLIB -I./include -I./lib `C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/feature_selection/feature_selector.cc -o src/feature_selection/feature_selector.o
In file included from ./include/gin/feature_selection/scones.h:8,
from src/feature_selection/feature_selector.cc:9:
./include/gin/globals.h:60:10: fatal error: Rcpp.h: No such file or directory
#include "Rcpp.h"
^~~~~~~~
compilation terminated.
make: *** [Makevars.win:16: src/feature_selection/feature_selector.o] Error 1
ERROR: compilation failed for package 'Rgin'
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Rgin.buildbin-libdir/Rgin'