Pierrick Roger
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_20 |
| git_last_commit: 0eb718c |
| git_last_commit_date: 2024-10-29 11:06:39 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:04 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 204/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz |
| StartedAt: 2025-03-17 21:06:34 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 21:07:22 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 48.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-17 21:07:05.162][biodb::testContext]
biodb.INFO [2025-03-17 21:07:05.164][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:05.165][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-17 21:07:05.166][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:05.167][biodb::testContext]
biodb.INFO [2025-03-17 21:07:05.169][biodb::testThat]
biodb.INFO [2025-03-17 21:07:05.170][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-17 21:07:05.171][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:05.172][biodb::testThat]
biodb.INFO [2025-03-17 21:07:05.296][biodb::testContext]
biodb.INFO [2025-03-17 21:07:05.299][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:05.300][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-17 21:07:05.301][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:05.303][biodb::testContext]
biodb.INFO [2025-03-17 21:07:05.314][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:05.316][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:05.326][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:05.327][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 21:07:05.328][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.332][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 21:07:05.377][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.381][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 21:07:05.383][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.387][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 21:07:05.388][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 21:07:05.389][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 21:07:05.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.393][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 21:07:05.394][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 21:07:05.395][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.400][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 21:07:05.401][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 21:07:05.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.405][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 21:07:05.406][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 21:07:05.407][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 21:07:05.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.411][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 21:07:05.412][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.416][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 21:07:05.417][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 21:07:05.419][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 21:07:05.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.423][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:05.424][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 21:07:05.425][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 21:07:05.426][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 21:07:05.427][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 21:07:05.429][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 21:07:05.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.433][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 21:07:05.434][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 21:07:05.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.438][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 21:07:05.439][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 21:07:05.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.443][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 21:07:05.444][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 21:07:05.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.448][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 21:07:05.449][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 21:07:05.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.453][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 21:07:05.454][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 21:07:05.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.458][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:05.459][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 21:07:05.463][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 21:07:05.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.467][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 21:07:05.468][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 21:07:05.469][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 21:07:05.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.476][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 21:07:05.512][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.527][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 21:07:05.528][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.529][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:05.530][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.531][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.532][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.533][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.534][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:05.535][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:05.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.537][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 21:07:05.538][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:05.539][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.540][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.541][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:05.541][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:05.541][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:05.541][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:05.541][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:05.542][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:05.542][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.543][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.544][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:05.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.547][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.548][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.549][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:05.550][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:05.551][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.551][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.553][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 21:07:05.554][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.556][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:05.562][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.563][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:05.564][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.565][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.566][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.567][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.568][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:05.568][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:05.569][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.570][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 21:07:05.571][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:05.572][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.573][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.574][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:05.574][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:05.574][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:05.574][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:05.574][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:05.575][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:05.576][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.576][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.577][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:05.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.580][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.581][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.582][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:05.582][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:05.583][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.584][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.585][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 21:07:05.587][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.588][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 21:07:05.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:05.591][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.592][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.593][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.594][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:05.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:05.596][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.597][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 21:07:05.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:05.599][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.600][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.601][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.602][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:05.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.604][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:05.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.607][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.608][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.609][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:05.610][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:05.611][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.613][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.614][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 21:07:05.616][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.617][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:05.618][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.619][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:05.620][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.622][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.623][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.624][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.625][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:05.626][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:05.627][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.628][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 21:07:05.629][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:05.631][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.632][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:05.633][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.634][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:05.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.637][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:05.638][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:05.639][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:05.640][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:05.641][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.642][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:05.643][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:05.644][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:05.645][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:05.650][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:05.651][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.733][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 21:07:05.738][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 21:07:05.739][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 21:07:05.741][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 21:07:05.743][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 21:07:05.750][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:05.751][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:05.753][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:05.754][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 21:07:05.755][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:05.757][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:05.758][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 21:07:05.760][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:05.761][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:05.763][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 21:07:05.764][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:05.765][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 21:07:05.767][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 21:07:05.768][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 21:07:05.770][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 21:07:05.771][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 21:07:05.773][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 21:07:05.774][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 21:07:05.775][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 21:07:05.777][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 21:07:05.778][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 21:07:05.780][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 21:07:05.781][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 21:07:05.783][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 21:07:05.784][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 21:07:05.786][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 21:07:05.787][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 21:07:05.788][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 21:07:05.790][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 21:07:05.791][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 21:07:05.793][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 21:07:05.794][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 21:07:05.796][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 21:07:05.797][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 21:07:05.799][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 21:07:05.800][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 21:07:05.802][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 21:07:05.803][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 21:07:05.805][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 21:07:05.806][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 21:07:05.808][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 21:07:05.809][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 21:07:05.811][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 21:07:05.812][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 21:07:05.814][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 21:07:05.815][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 21:07:05.817][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 21:07:05.818][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 21:07:05.820][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 21:07:05.821][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 21:07:05.823][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 21:07:05.824][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 21:07:05.826][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 21:07:05.827][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 21:07:05.828][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 21:07:05.830][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 21:07:05.831][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 21:07:05.833][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 21:07:05.835][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 21:07:05.836][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 21:07:05.838][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 21:07:05.839][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 21:07:05.841][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 21:07:05.842][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 21:07:05.844][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 21:07:05.846][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 21:07:05.847][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 21:07:05.849][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 21:07:05.850][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 21:07:05.852][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 21:07:05.853][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 21:07:05.855][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 21:07:05.856][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 21:07:05.858][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 21:07:05.859][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 21:07:05.860][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 21:07:05.862][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 21:07:05.863][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 21:07:05.870][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 21:07:05.871][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:05.875][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:05.876][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.877][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:05.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:05.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:05.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:05.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:05.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:05.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:05.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:06.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:06.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:06.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:06.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:06.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:06.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:06.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:06.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:06.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:06.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:06.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:06.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:06.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:06.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:06.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:06.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:06.030][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:06.041][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:06.044][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:06.045][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 21:07:06.046][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:06.047][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:06.048][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:06.049][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-17 21:07:06.050][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:06.051][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:06.052][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 21:07:06.053][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:06.054][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:06.055][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-17 21:07:06.056][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-17 21:07:06.057][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-17 21:07:06.058][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:06.059][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:06.059][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-17 21:07:06.059][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-17 21:07:06.060][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 21:07:06.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:06.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:06.063][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:06.065][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:06.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:06.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:06.068][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:06.068][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-17 21:07:06.069][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:06.070][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:06.071][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:06.072][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:06.078][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-17 21:07:06.080][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:06.082][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:06.084][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:06.085][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:06.109][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:06.110][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-17 21:07:06.115][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:06.119][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:06.124][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:06.125][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:06.127][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-17 21:07:06.128][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-17 21:07:06.129][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:06.129][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-17 21:07:06.130][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:06.131][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:06.132][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-17 21:07:06.133][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-17 21:07:06.134][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:06.160][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:06.162][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:06.163][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:06.164][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:06.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:06.166][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-17 21:07:06.175][biodb::testThat]
biodb.INFO [2025-03-17 21:07:06.175][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-17 21:07:06.177][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:06.177][biodb::testThat]
biodb.TRACE[2025-03-17 21:07:06.195][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-17 21:07:06.198][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:06.202][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:06.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:06.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:06.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:06.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:06.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:06.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:06.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:06.233][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.258][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.259][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.297][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.298][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.306][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.307][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.311][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.324][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.325][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.378][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.379][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:06.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:06.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:06.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:06.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.434][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.439][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:06.440][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:06.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:06.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:06.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.455][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:06.457][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:06.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.529][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:06.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:06.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:06.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:06.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.690][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.698][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:06.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:06.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:06.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:06.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.730][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:06.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:06.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:06.815][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-17 21:07:06.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:06.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.079][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.081][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.117][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.118][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.267][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.268][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.316][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.325][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.326][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.386][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.388][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.413][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.414][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.442][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.443][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.552][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.553][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.566][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.569][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.574][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.575][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.581][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.582][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.595][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.596][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.611][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.617][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.618][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.624][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.625][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.631][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.682][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.683][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.691][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:07.698][biodb::testThat]
biodb.INFO [2025-03-17 21:07:07.699][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-17 21:07:07.699][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:07.700][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:07.714][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-17 21:07:07.722][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:07.744][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:07.745][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:07.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-17 21:07:07.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 21:07:07.751][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-17 21:07:07.752][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:07.776][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:07.777][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:07.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:07.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:07.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:07.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:07.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:07.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:07.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:07.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.798][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.799][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.802][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.806][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.807][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.814][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.815][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.834][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.835][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.857][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.858][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.866][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.914][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.915][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.930][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:07.931][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:07.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:08.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:08.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:08.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:08.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:08.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.129][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.133][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:08.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.230][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-17 21:07:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-17 21:07:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-17 21:07:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-17 21:07:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-17 21:07:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-17 21:07:08.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-17 21:07:08.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:08.248][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.249][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-17 21:07:08.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.250][biodb::testThat]
biodb.TRACE[2025-03-17 21:07:08.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.256][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.258][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-17 21:07:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.298][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-17 21:07:08.299][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-17 21:07:08.300][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-17 21:07:08.301][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-17 21:07:08.302][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.304][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.305][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:08.307][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.308][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:08.309][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:08.310][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:08.311][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:08.312][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:08.313][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:08.314][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.332][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:08.333][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:08.333][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-17 21:07:08.344][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.345][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.351][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.353][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-17 21:07:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.377][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-17 21:07:08.430][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-17 21:07:08.431][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-17 21:07:08.433][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-17 21:07:08.446][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.449][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:08.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.451][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:08.470][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:08.471][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:08.472][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:08.473][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:08.474][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:08.475][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:08.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.491][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:08.492][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:08.493][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-17 21:07:08.504][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.505][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.507][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.508][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-17 21:07:08.519][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.523][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.533][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-17 21:07:08.535][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-17 21:07:08.536][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-17 21:07:08.537][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-17 21:07:08.538][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.540][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.541][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:08.543][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.543][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:08.545][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:08.546][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:08.547][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:08.548][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:08.549][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:08.550][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.555][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:08.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.566][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:08.567][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:08.568][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-17 21:07:08.581][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.582][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-17 21:07:08.583][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.584][biodb::testThat]
biodb.TRACE[2025-03-17 21:07:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.617][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-17 21:07:08.618][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-17 21:07:08.619][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-17 21:07:08.621][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.623][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.624][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:08.625][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:08.626][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:08.627][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:08.628][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:08.629][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:08.630][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:08.631][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:08.632][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:08.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:08.649][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:08.650][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-17 21:07:08.664][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.665][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-17 21:07:08.666][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.667][biodb::testThat]
biodb.TRACE[2025-03-17 21:07:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-17 21:07:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-17 21:07:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:08.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-17 21:07:08.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:08.771][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.772][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-17 21:07:08.773][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.774][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.781][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.782][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-17 21:07:08.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.784][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.791][biodb::testThat]
biodb.INFO [2025-03-17 21:07:08.792][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-17 21:07:08.793][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:08.794][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:08.797][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-17 21:07:10.930][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-17 21:07:10.982][biodb::testThat]
biodb.INFO [2025-03-17 21:07:10.984][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-17 21:07:10.985][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:10.986][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:11.155][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-17 21:07:11.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:11.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:11.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.203][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:11.205][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:11.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.208][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:11.210][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:11.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.212][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:11.213][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.215][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-17 21:07:11.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:11.217][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:11.219][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-17 21:07:11.294][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:11.297][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.299][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:11.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-17 21:07:11.318][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-17 21:07:11.319][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-17 21:07:11.320][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:11.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.323][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:11.324][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:11.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:11.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:11.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:11.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:11.404][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-17 21:07:11.405][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-17 21:07:11.421][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.422][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-17 21:07:11.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:11.424][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:11.431][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-17 21:07:11.433][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-17 21:07:11.434][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:11.435][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.437][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:11.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-17 21:07:11.440][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-17 21:07:11.441][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-17 21:07:11.442][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:11.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.444][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:11.446][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:11.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:11.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:11.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:11.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:11.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:11.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:11.492][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-17 21:07:11.492][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-17 21:07:11.494][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-17 21:07:11.514][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.515][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-17 21:07:11.516][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:11.517][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.539][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.540][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-17 21:07:11.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:11.542][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:11.544][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.545][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.547][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:11.548][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.549][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:11.550][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:11.551][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:11.552][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:11.553][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-17 21:07:11.560][biodb::testThat]
biodb.INFO [2025-03-17 21:07:11.561][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-17 21:07:11.561][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:11.562][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:11.565][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.566][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.567][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:11.569][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:11.570][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:11.571][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:11.572][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:11.573][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:11.573][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-17 21:07:11.581][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:11.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:11.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.585][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:11.586][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:11.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:11.588][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:11.589][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:11.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:11.591][ef$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:11.592][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 21:07:11.593][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-17 21:07:11.601][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-17 21:07:11.601][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 21:07:11.602][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:11.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:11.604][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.610][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 21:07:11.615][biodb::testContext]
biodb.INFO [2025-03-17 21:07:11.616][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:11.616][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-17 21:07:11.617][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:11.618][biodb::testContext]
biodb.INFO [2025-03-17 21:07:11.622][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:11.623][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:11.627][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:11.628][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 21:07:11.629][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.632][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 21:07:11.633][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.636][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 21:07:11.637][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.641][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 21:07:11.642][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 21:07:11.643][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 21:07:11.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.646][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 21:07:11.647][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 21:07:11.648][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.651][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 21:07:11.652][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 21:07:11.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.655][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 21:07:11.656][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 21:07:11.657][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 21:07:11.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.661][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 21:07:11.662][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.665][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 21:07:11.666][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 21:07:11.667][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 21:07:11.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.670][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:11.671][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 21:07:11.672][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 21:07:11.673][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 21:07:11.674][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 21:07:11.675][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 21:07:11.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.678][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 21:07:11.679][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 21:07:11.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.683][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 21:07:11.684][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 21:07:11.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.687][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 21:07:11.688][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 21:07:11.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.692][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 21:07:11.692][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 21:07:11.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.696][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 21:07:11.697][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 21:07:11.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.700][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:11.701][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 21:07:11.705][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 21:07:11.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.708][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 21:07:11.709][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 21:07:11.710][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 21:07:11.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.718][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 21:07:11.721][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.722][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 21:07:11.723][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.723][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:11.724][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.725][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.726][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.727][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.728][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:11.729][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:11.730][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.731][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 21:07:11.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:11.733][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.733][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.734][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:11.734][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:11.734][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:11.734][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:11.734][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:11.735][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:11.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.738][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:11.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.741][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.742][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.742][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:11.743][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:11.744][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.745][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.746][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 21:07:11.748][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.749][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:11.750][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.751][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:11.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.754][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.755][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.756][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:11.756][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:11.757][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.758][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 21:07:11.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:11.760][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.761][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.762][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:11.762][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:11.762][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:11.762][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:11.762][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:11.763][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:11.764][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.765][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.766][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:11.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.768][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.768][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.769][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.770][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:11.771][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:11.772][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.773][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.774][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 21:07:11.776][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.777][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 21:07:11.778][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.779][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:11.780][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.781][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.782][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.783][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.784][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:11.785][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:11.786][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.786][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 21:07:11.787][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:11.788][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.789][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.790][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.791][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:11.792][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.793][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.794][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:11.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.796][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.797][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.798][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.799][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:11.800][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:11.800][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.801][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.803][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 21:07:11.804][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.805][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:11.806][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.807][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:11.808][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.809][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.810][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.811][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.812][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:11.813][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:11.814][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.815][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 21:07:11.816][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:11.817][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.824][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:11.826][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.827][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:11.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.829][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:11.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:11.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:11.832][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:11.833][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.834][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:11.835][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:11.836][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:11.837][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:11.838][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:11.839][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:11.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:11.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:11.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:11.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:11.912][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 21:07:11.914][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 21:07:11.915][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 21:07:11.917][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 21:07:11.918][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 21:07:11.919][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:11.921][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:11.927][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:11.928][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 21:07:11.930][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:11.931][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:11.932][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 21:07:11.934][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:11.935][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:11.936][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 21:07:11.937][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:11.939][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 21:07:11.940][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 21:07:11.941][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 21:07:11.943][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 21:07:11.944][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 21:07:11.945][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 21:07:11.947][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 21:07:11.948][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 21:07:11.949][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 21:07:11.951][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 21:07:11.952][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 21:07:11.953][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 21:07:11.955][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 21:07:11.956][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 21:07:11.957][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 21:07:11.959][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 21:07:11.960][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 21:07:11.961][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 21:07:11.962][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 21:07:11.964][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 21:07:11.965][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 21:07:11.966][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 21:07:11.968][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 21:07:11.969][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 21:07:11.970][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 21:07:11.971][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 21:07:11.973][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 21:07:11.974][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 21:07:11.975][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 21:07:11.977][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 21:07:11.978][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 21:07:11.979][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 21:07:11.981][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 21:07:11.982][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 21:07:11.983][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 21:07:11.984][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 21:07:11.986][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 21:07:11.987][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 21:07:11.988][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 21:07:11.989][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 21:07:11.991][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 21:07:11.992][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 21:07:11.993][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 21:07:11.995][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 21:07:11.996][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 21:07:11.997][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 21:07:11.998][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 21:07:12.000][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 21:07:12.001][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 21:07:12.002][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 21:07:12.003][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 21:07:12.005][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 21:07:12.006][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 21:07:12.007][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 21:07:12.009][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 21:07:12.010][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 21:07:12.011][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 21:07:12.012][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 21:07:12.014][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 21:07:12.015][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 21:07:12.016][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 21:07:12.018][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 21:07:12.019][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 21:07:12.025][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 21:07:12.026][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 21:07:12.028][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 21:07:12.029][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 21:07:12.030][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 21:07:12.032][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:12.033][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:12.034][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.035][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.138][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:12.140][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:12.142][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.143][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.143][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.144][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:12.145][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.146][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-17 21:07:12.147][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.148][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.149][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 21:07:12.150][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:12.151][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.152][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-17 21:07:12.153][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-17 21:07:12.154][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-17 21:07:12.155][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.156][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:12.156][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-17 21:07:12.156][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-17 21:07:12.157][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 21:07:12.157][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.158][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.159][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:12.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.162][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.163][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:12.163][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-17 21:07:12.164][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.164][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.165][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.166][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.167][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-17 21:07:12.169][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:12.170][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:12.172][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:12.173][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:12.176][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:12.177][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-17 21:07:12.178][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:12.179][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:12.180][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:12.181][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:12.183][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-17 21:07:12.183][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-17 21:07:12.184][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:12.184][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-17 21:07:12.185][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.186][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.187][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-17 21:07:12.188][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-17 21:07:12.189][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:12.190][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:12.191][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:12.192][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:12.193][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:12.195][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:12.195][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-17 21:07:12.197][biodb::testThat]
biodb.INFO [2025-03-17 21:07:12.198][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-17 21:07:12.199][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:12.199][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:12.203][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:12.204][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:12.206][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:12.207][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:12.208][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:12.209][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:12.210][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:12.211][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:12.212][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:12.215][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-17 21:07:12.225][biodb::testThat]
biodb.INFO [2025-03-17 21:07:12.226][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-17 21:07:12.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:12.228][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:12.230][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-17 21:07:12.231][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:12.232][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:12.233][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:12.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-17 21:07:12.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 21:07:12.238][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-17 21:07:12.239][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:12.240][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:12.241][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:12.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:12.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:12.255][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.262][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.263][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.270][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.271][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.278][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.279][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.293][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.294][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.316][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.317][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.328][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.329][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:12.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:12.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:12.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:12.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.375][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:12.376][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:12.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.383][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:12.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:12.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.391][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:12.392][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.422][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:12.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:12.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:12.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:12.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:12.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:12.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:12.692][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-17 21:07:12.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-17 21:07:12.709][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 21:07:12.710][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-17 21:07:12.711][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-17 21:07:12.712][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 21:07:12.713][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:12.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:12.715][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.716][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 21:07:12.721][biodb::testContext]
biodb.INFO [2025-03-17 21:07:12.722][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:12.723][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-17 21:07:12.723][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-17 21:07:12.724][biodb::testContext]
biodb.INFO [2025-03-17 21:07:12.728][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:12.730][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:12.738][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:12.739][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-17 21:07:12.741][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.744][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-17 21:07:12.745][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.748][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-17 21:07:12.749][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.753][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-17 21:07:12.753][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-17 21:07:12.754][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-17 21:07:12.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.758][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-17 21:07:12.759][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-17 21:07:12.760][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.763][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-17 21:07:12.764][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-17 21:07:12.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.767][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-17 21:07:12.768][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-17 21:07:12.769][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-17 21:07:12.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.773][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-17 21:07:12.774][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.777][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-17 21:07:12.778][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-17 21:07:12.779][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-17 21:07:12.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.782][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:12.783][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-17 21:07:12.784][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-17 21:07:12.785][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-17 21:07:12.786][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-17 21:07:12.787][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-17 21:07:12.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.790][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-17 21:07:12.791][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-17 21:07:12.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.794][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-17 21:07:12.795][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-17 21:07:12.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.799][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-17 21:07:12.800][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-17 21:07:12.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.803][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-17 21:07:12.804][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-17 21:07:12.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.808][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-17 21:07:12.808][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-17 21:07:12.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.812][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-17 21:07:12.813][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-17 21:07:12.816][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-17 21:07:12.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.819][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-17 21:07:12.820][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-17 21:07:12.821][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-17 21:07:12.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.825][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-17 21:07:12.827][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.828][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-17 21:07:12.828][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.829][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:12.830][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.831][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.832][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.837][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.838][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:12.840][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:12.841][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.841][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-17 21:07:12.842][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:12.843][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.844][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.845][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:12.845][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:12.845][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:12.845][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:12.845][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:12.846][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:12.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.848][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.849][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:12.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.851][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.852][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.853][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.855][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.856][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.857][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-17 21:07:12.858][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.859][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:12.860][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.861][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:12.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.863][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.864][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.865][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.866][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:12.867][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:12.868][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.869][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-17 21:07:12.870][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:12.871][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-17 21:07:12.872][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-17 21:07:12.873][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:12.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.876][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:12.877][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.878][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.879][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.879][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.880][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.881][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.882][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.883][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.884][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-17 21:07:12.891][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.893][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-17 21:07:12.894][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.895][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:12.896][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.897][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.898][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.899][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.900][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-17 21:07:12.901][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:12.902][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.903][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-17 21:07:12.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:12.905][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.906][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.908][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.909][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:12.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:12.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.915][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.916][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.919][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.920][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.921][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-17 21:07:12.923][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.924][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-17 21:07:12.925][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.926][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:12.927][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.928][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.929][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.930][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.932][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-17 21:07:12.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:12.934][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.935][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-17 21:07:12.936][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:12.937][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.938][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:12.939][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.940][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-17 21:07:12.941][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.942][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.959][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:12.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:12.962][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:12.963][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:12.965][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.966][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:12.966][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:12.967][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:12.968][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:12.970][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:12.971][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:12.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:12.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:12.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:12.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:12.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.046][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-17 21:07:13.047][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-17 21:07:13.049][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-17 21:07:13.050][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-17 21:07:13.051][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-17 21:07:13.053][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:13.054][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:13.055][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:13.061][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-17 21:07:13.063][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:13.064][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:13.066][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-17 21:07:13.067][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-17 21:07:13.068][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-17 21:07:13.069][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-17 21:07:13.071][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:13.072][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-17 21:07:13.073][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-17 21:07:13.074][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-17 21:07:13.076][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-17 21:07:13.077][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-17 21:07:13.078][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-17 21:07:13.079][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-17 21:07:13.081][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-17 21:07:13.082][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-17 21:07:13.083][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-17 21:07:13.084][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-17 21:07:13.086][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-17 21:07:13.087][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-17 21:07:13.088][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-17 21:07:13.090][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-17 21:07:13.091][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-17 21:07:13.092][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-17 21:07:13.093][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-17 21:07:13.095][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-17 21:07:13.096][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-17 21:07:13.097][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-17 21:07:13.098][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-17 21:07:13.100][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-17 21:07:13.101][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-17 21:07:13.102][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-17 21:07:13.104][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-17 21:07:13.105][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-17 21:07:13.106][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-17 21:07:13.107][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-17 21:07:13.109][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-17 21:07:13.110][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-17 21:07:13.111][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-17 21:07:13.113][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-17 21:07:13.114][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-17 21:07:13.115][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-17 21:07:13.116][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-17 21:07:13.118][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-17 21:07:13.119][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-17 21:07:13.120][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-17 21:07:13.121][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-17 21:07:13.123][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-17 21:07:13.124][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-17 21:07:13.125][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-17 21:07:13.127][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-17 21:07:13.128][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-17 21:07:13.129][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-17 21:07:13.130][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-17 21:07:13.132][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-17 21:07:13.133][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-17 21:07:13.134][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-17 21:07:13.135][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-17 21:07:13.137][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-17 21:07:13.138][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-17 21:07:13.139][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-17 21:07:13.141][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-17 21:07:13.142][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-17 21:07:13.143][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-17 21:07:13.144][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-17 21:07:13.146][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-17 21:07:13.147][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-17 21:07:13.148][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-17 21:07:13.154][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-17 21:07:13.156][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-17 21:07:13.157][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-17 21:07:13.158][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-17 21:07:13.160][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-17 21:07:13.161][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-17 21:07:13.162][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-17 21:07:13.164][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-17 21:07:13.165][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-17 21:07:13.166][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.167][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-17 21:07:13.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.270][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-17 21:07:13.271][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:13.273][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:13.274][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-17 21:07:13.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:13.275][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-17 21:07:13.276][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:13.277][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-17 21:07:13.278][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:13.279][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-17 21:07:13.280][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-17 21:07:13.281][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-17 21:07:13.282][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:13.283][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-17 21:07:13.284][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-17 21:07:13.285][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-17 21:07:13.286][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-17 21:07:13.286][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-17 21:07:13.286][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-17 21:07:13.287][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-17 21:07:13.288][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:13.289][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:13.290][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-17 21:07:13.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-17 21:07:13.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-17 21:07:13.292][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-17 21:07:13.293][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:13.293][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-17 21:07:13.294][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:13.295][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:13.296][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-17 21:07:13.297][self$setPropertyValue]
biodb.DEBUG[2025-03-17 21:07:13.298][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-17 21:07:13.299][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-17 21:07:13.301][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-17 21:07:13.302][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-17 21:07:13.304][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-17 21:07:13.307][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:13.308][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-17 21:07:13.309][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:13.310][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:13.311][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:13.312][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:13.313][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-17 21:07:13.314][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-17 21:07:13.315][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-17 21:07:13.315][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-17 21:07:13.316][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-17 21:07:13.317][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-17 21:07:13.318][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-17 21:07:13.319][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-17 21:07:13.319][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-17 21:07:13.321][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:13.322][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:13.323][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:13.324][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-17 21:07:13.325][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-17 21:07:13.326][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-17 21:07:13.327][biodb::testThat]
biodb.INFO [2025-03-17 21:07:13.328][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-17 21:07:13.329][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-17 21:07:13.330][biodb::testThat]
biodb.DEBUG[2025-03-17 21:07:13.332][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-17 21:07:13.333][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-17 21:07:13.334][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-17 21:07:13.337][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:13.338][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:13.344][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:13.345][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:13.346][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:13.347][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:13.348][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:13.349][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:13.350][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:13.351][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:13.352][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-17 21:07:13.353][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-17 21:07:13.354][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:13.355][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:13.357][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:13.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-17 21:07:13.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 21:07:13.361][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-17 21:07:13.362][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:13.363][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:13.364][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:13.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:13.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:13.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.386][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.387][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.388][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.393][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.394][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.396][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.397][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.401][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.402][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.416][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.417][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.434][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.443][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.444][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.458][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.459][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.461][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.484][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.496][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.497][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.499][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.505][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.511][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:13.512][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.530][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.554][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:13.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:13.809][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-17 21:07:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.814][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:13.825][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:13.826][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:13.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:13.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:13.840][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-17 21:07:13.841][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-17 21:07:13.843][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:13.845][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-17 21:07:13.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-17 21:07:13.848][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-17 21:07:13.849][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-17 21:07:13.850][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-17 21:07:13.851][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-17 21:07:13.852][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-17 21:07:13.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:13.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:13.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:13.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:13.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:13.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:13.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:13.865][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:13.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.873][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.874][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:13.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.881][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.882][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.888][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.889][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.904][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.905][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.927][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.928][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.935][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.936][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:13.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.985][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.986][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.000][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:14.001][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-17 21:07:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-17 21:07:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-17 21:07:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-17 21:07:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-17 21:07:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-17 21:07:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-17 21:07:14.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-17 21:07:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-17 21:07:14.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-17 21:07:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-17 21:07:14.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-17 21:07:14.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-17 21:07:14.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-17 21:07:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-17 21:07:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-17 21:07:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:14.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:14.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:14.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:14.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-17 21:07:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-17 21:07:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.248][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-17 21:07:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-17 21:07:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-17 21:07:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-17 21:07:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-17 21:07:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-17 21:07:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-17 21:07:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.316][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-17 21:07:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.324][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.332][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:14.333][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:14.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:14.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:14.347][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-17 21:07:14.348][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-17 21:07:14.349][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-17 21:07:14.351][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.353][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:14.355][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.356][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:14.357][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:14.362][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:14.363][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:14.364][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:14.366][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:14.367][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.394][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:14.395][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:14.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:14.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.432][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-17 21:07:14.433][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:14.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:14.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-17 21:07:14.446][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-17 21:07:14.447][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-17 21:07:14.448][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-17 21:07:14.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.451][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.453][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-17 21:07:14.454][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-17 21:07:14.455][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-17 21:07:14.456][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-17 21:07:14.457][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-17 21:07:14.458][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-17 21:07:14.459][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-17 21:07:14.464][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-17 21:07:14.465][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-17 21:07:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.472][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.493][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-17 21:07:14.494][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-17 21:07:14.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:14.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-17 21:07:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.512][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-17 21:07:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-17 21:07:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-17 21:07:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-17 21:07:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-17 21:07:14.530][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-17 21:07:14.531][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-17 21:07:14.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-17 21:07:14.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-17 21:07:14.547][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-17 21:07:14.548][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-17 21:07:14.549][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-17 21:07:14.550][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-17 21:07:14.551][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-17 21:07:14.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-17 21:07:14.552][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-17 21:07:14.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-17 21:07:14.554][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-17 21:07:14.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.693 0.378 11.382