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This page was generated on 2025-03-17 12:11 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4756
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4487
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4514
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4441
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4399
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 204/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.12.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-03-13 13:00 -0400 (Thu, 13 Mar 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_20
git_last_commit: 0eb718c
git_last_commit_date: 2024-10-29 11:06:39 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

CHECK results for biodbHmdb on taishan

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: biodbHmdb
Version: 1.12.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz
StartedAt: 2025-03-14 04:06:31 -0000 (Fri, 14 Mar 2025)
EndedAt: 2025-03-14 04:18:24 -0000 (Fri, 14 Mar 2025)
EllapsedTime: 713.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... NOTE
  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    libs   6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c FileEntryMaker.cpp -o FileEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c TagDetector.cpp -o TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c XmlSplitter.cpp -o XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c extractXmlEntries.cpp -o extractXmlEntries.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.3/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.3/site-library/testthat/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c test-runner.cpp -o test-runner.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.3/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R-4.4.3/lib -lR
installing to /home/biocbuild/R/R-4.4.3/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-14 04:18:03.131][biodb::testContext]
biodb.INFO [2025-03-14 04:18:03.134][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:03.135][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-14 04:18:03.137][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:03.138][biodb::testContext]
biodb.INFO [2025-03-14 04:18:03.140][biodb::testThat]
biodb.INFO [2025-03-14 04:18:03.142][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-14 04:18:03.143][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:03.144][biodb::testThat]
biodb.INFO [2025-03-14 04:18:03.270][biodb::testContext]
biodb.INFO [2025-03-14 04:18:03.271][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:03.273][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-14 04:18:03.274][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:03.275][biodb::testContext]
biodb.INFO [2025-03-14 04:18:03.286][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:03.289][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:03.297][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:03.298][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-14 04:18:03.300][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.305][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-14 04:18:03.338][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.343][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-14 04:18:03.344][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.349][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-14 04:18:03.351][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-14 04:18:03.352][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-14 04:18:03.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.357][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-14 04:18:03.358][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-14 04:18:03.359][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.364][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-14 04:18:03.365][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-14 04:18:03.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.370][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-14 04:18:03.371][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-14 04:18:03.373][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-14 04:18:03.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.378][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-14 04:18:03.379][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.384][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-14 04:18:03.385][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-14 04:18:03.386][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-14 04:18:03.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.391][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:03.393][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-14 04:18:03.394][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-14 04:18:03.395][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-14 04:18:03.397][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-14 04:18:03.398][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-14 04:18:03.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.403][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-14 04:18:03.404][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-14 04:18:03.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.409][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-14 04:18:03.411][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-14 04:18:03.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.415][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-14 04:18:03.417][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-14 04:18:03.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.421][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-14 04:18:03.423][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-14 04:18:03.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.428][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-14 04:18:03.429][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-14 04:18:03.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.434][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:03.435][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-14 04:18:03.440][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-14 04:18:03.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.445][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-14 04:18:03.446][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-14 04:18:03.448][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-14 04:18:03.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.455][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-14 04:18:03.501][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.523][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-14 04:18:03.525][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.526][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:03.527][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.528][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.530][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.531][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.532][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:03.534][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:03.535][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.536][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-14 04:18:03.538][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:03.539][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.540][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.542][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:03.542][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:03.542][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:03.542][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:03.542][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:03.543][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:03.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.547][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:03.548][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.552][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.553][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:03.554][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:03.555][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.557][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.558][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-14 04:18:03.561][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.562][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:03.571][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.572][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:03.573][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.574][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.576][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.577][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.578][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:03.580][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:03.581][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.582][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-14 04:18:03.584][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:03.585][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.586][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.588][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:03.588][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:03.588][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:03.588][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:03.588][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:03.589][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:03.590][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.593][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:03.594][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.596][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.598][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.599][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:03.600][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:03.601][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.602][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.604][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-14 04:18:03.606][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.608][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-14 04:18:03.609][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.610][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:03.612][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.613][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.614][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.615][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.617][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:03.618][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:03.619][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.621][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-14 04:18:03.622][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:03.623][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.625][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.626][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.627][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:03.629][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.630][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.631][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:03.632][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.633][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.635][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.636][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.637][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:03.638][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:03.640][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.641][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.643][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-14 04:18:03.645][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.646][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:03.647][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.649][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:03.650][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.651][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.653][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.654][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.655][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:03.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:03.658][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.659][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-14 04:18:03.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:03.662][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.663][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:03.665][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.666][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:03.667][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.670][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:03.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:03.672][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:03.673][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:03.675][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.676][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:03.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:03.679][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:03.680][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:03.685][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:03.686][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.789][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-14 04:18:03.795][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-14 04:18:03.797][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-14 04:18:03.799][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-14 04:18:03.800][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-14 04:18:03.809][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:03.811][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:03.813][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:03.815][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-14 04:18:03.817][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:03.819][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:03.820][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-14 04:18:03.822][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:03.824][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:03.826][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-14 04:18:03.828][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:03.830][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-14 04:18:03.832][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-14 04:18:03.834][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-14 04:18:03.836][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-14 04:18:03.838][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-14 04:18:03.840][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-14 04:18:03.842][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-14 04:18:03.844][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-14 04:18:03.845][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-14 04:18:03.847][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-14 04:18:03.849][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-14 04:18:03.851][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-14 04:18:03.853][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-14 04:18:03.855][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-14 04:18:03.857][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-14 04:18:03.859][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-14 04:18:03.860][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-14 04:18:03.862][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-14 04:18:03.864][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-14 04:18:03.866][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-14 04:18:03.868][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-14 04:18:03.870][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-14 04:18:03.872][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-14 04:18:03.874][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-14 04:18:03.875][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-14 04:18:03.877][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-14 04:18:03.879][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-14 04:18:03.881][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-14 04:18:03.883][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-14 04:18:03.885][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-14 04:18:03.887][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-14 04:18:03.889][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-14 04:18:03.891][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-14 04:18:03.893][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-14 04:18:03.894][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-14 04:18:03.896][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-14 04:18:03.898][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-14 04:18:03.900][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-14 04:18:03.902][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-14 04:18:03.904][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-14 04:18:03.906][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-14 04:18:03.908][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-14 04:18:03.910][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-14 04:18:03.912][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-14 04:18:03.914][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-14 04:18:03.915][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-14 04:18:03.917][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-14 04:18:03.919][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-14 04:18:03.921][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-14 04:18:03.923][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-14 04:18:03.924][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-14 04:18:03.926][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-14 04:18:03.928][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-14 04:18:03.930][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-14 04:18:03.932][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-14 04:18:03.934][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-14 04:18:03.936][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-14 04:18:03.937][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-14 04:18:03.939][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-14 04:18:03.941][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-14 04:18:03.943][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-14 04:18:03.945][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-14 04:18:03.947][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-14 04:18:03.949][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-14 04:18:03.950][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-14 04:18:03.952][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-14 04:18:03.954][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-14 04:18:03.962][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-14 04:18:03.964][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:03.968][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:03.970][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.972][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:03.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:03.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:03.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:03.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:03.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:03.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:03.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:03.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:03.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:03.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:03.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:04.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:04.149][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:04.163][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:04.166][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:04.168][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-14 04:18:04.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:04.170][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:04.172][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:04.173][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-14 04:18:04.174][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:04.176][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:04.177][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-14 04:18:04.178][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:04.179][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:04.181][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-14 04:18:04.182][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-14 04:18:04.183][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-14 04:18:04.185][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:04.186][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:04.186][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-14 04:18:04.186][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-14 04:18:04.188][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-14 04:18:04.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:04.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:04.191][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:04.193][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:04.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:04.195][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:04.196][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:04.196][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-14 04:18:04.198][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:04.199][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:04.200][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:04.201][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:04.210][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-14 04:18:04.212][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:04.214][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:04.216][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:04.218][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:04.246][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:04.247][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-14 04:18:04.252][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:04.259][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:04.265][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:04.267][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:04.269][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-14 04:18:04.270][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-14 04:18:04.271][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:04.271][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-14 04:18:04.273][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:04.274][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:04.275][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-14 04:18:04.276][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-14 04:18:04.278][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:04.311][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:04.313][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:04.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:04.316][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:04.317][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:04.318][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-14 04:18:04.328][biodb::testThat]
biodb.INFO [2025-03-14 04:18:04.329][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-14 04:18:04.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:04.332][biodb::testThat]
biodb.TRACE[2025-03-14 04:18:04.338][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-14 04:18:04.340][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:04.345][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:04.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:04.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:04.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:04.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:04.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:04.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:04.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:04.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:04.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:04.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.410][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.412][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.456][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.457][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.467][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.468][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.489][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.490][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.513][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.532][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.533][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.543][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.544][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:04.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:04.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:04.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:04.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.598][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:04.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:04.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.609][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:04.610][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:04.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:04.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.624][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:04.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:04.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.631][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:04.632][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:04.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:04.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.719][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.725][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.735][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:04.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:04.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:04.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:04.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:04.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:04.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:04.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:04.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:04.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:04.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:04.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:04.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:04.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:04.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.950][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:04.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:04.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.068][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.085][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:05.133][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-14 04:18:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:05.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.191][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.309][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.315][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.334][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.335][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:05.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.374][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.376][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:05.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.544][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:05.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.584][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:05.586][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:05.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.625][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:05.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:05.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.665][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.667][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.757][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.759][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:05.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.845][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:05.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.881][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:05.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:05.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:05.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:05.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:05.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:05.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:05.996][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.997][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:05.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.017][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.027][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.029][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.038][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.039][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.058][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.060][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.069][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.070][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.073][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.079][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.080][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.089][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.091][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.100][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.101][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.110][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.170][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.190][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.192][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.205][ef$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:06.215][biodb::testThat]
biodb.INFO [2025-03-14 04:18:06.217][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-14 04:18:06.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:06.219][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:06.239][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-14 04:18:06.248][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-03-14 04:18:06.254][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-03-14 04:18:06.256][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-03-14 04:18:06.258][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-03-14 04:18:06.259][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-03-14 04:18:06.262][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-03-14 04:18:06.264][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:06.266][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:06.268][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:06.270][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-03-14 04:18:06.272][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1d9f0836e85a38marker".
biodb.TRACE[2025-03-14 04:18:06.274][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-03-14 04:18:06.275][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:06.277][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-14 04:18:06.279][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-03-14 04:18:06.281][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-03-14 04:18:06.283][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:06.285][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-03-14 04:18:06.301][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-03-14 04:18:06.303][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-03-14 04:18:06.304][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-03-14 04:18:06.306][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-03-14 04:18:06.315][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-03-14 04:18:06.317][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-14 04:18:06.318][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:06.320][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-03-14 04:18:06.322][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1d9f0854735cb4marker".
biodb.TRACE[2025-03-14 04:18:06.324][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-03-14 04:18:06.325][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-03-14 04:18:06.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-14 04:18:06.329][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-14 04:18:06.331][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-14 04:18:06.333][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:06.366][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:06.368][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:06.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:06.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:06.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:06.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:06.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:06.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:06.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:06.395][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.406][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.408][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.418][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.419][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.429][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.430][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.452][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.453][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.487][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.488][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.498][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.500][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.510][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.568][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.570][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.598][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:06.600][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:06.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:06.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:06.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:06.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:06.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.927][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:06.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.070][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-14 04:18:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-14 04:18:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-14 04:18:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-14 04:18:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-14 04:18:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-14 04:18:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-14 04:18:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:07.100][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.102][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-14 04:18:07.103][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.105][biodb::testThat]
biodb.TRACE[2025-03-14 04:18:07.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.114][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.116][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-14 04:18:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.176][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-14 04:18:07.178][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-14 04:18:07.179][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-14 04:18:07.180][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.INFO [2025-03-14 04:18:07.183][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-03-14 04:18:07.184][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-03-14 04:18:07.186][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-03-14 04:18:07.187][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-03-14 04:18:07.190][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-03-14 04:18:07.191][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:07.193][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:07.195][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:07.196][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-03-14 04:18:07.199][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1d9f0860dc4e3marker".
biodb.TRACE[2025-03-14 04:18:07.208][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-03-14 04:18:07.209][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:07.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-14 04:18:07.214][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-03-14 04:18:07.231][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-03-14 04:18:07.234][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-14 04:18:07.235][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-03-14 04:18:07.238][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-03-14 04:18:07.239][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-03-14 04:18:07.241][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-03-14 04:18:07.243][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-03-14 04:18:07.252][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-03-14 04:18:07.254][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-14 04:18:07.255][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:07.257][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-03-14 04:18:07.259][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1d9f084db4e6b9marker".
biodb.TRACE[2025-03-14 04:18:07.261][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-03-14 04:18:07.262][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-14 04:18:07.264][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:07.266][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.267][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:07.269][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:07.270][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:07.272][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:07.273][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:07.275][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:07.276][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.301][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:07.302][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:07.304][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-14 04:18:07.320][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.321][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.324][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.326][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-14 04:18:07.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.364][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-14 04:18:07.449][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-14 04:18:07.451][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-14 04:18:07.452][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-14 04:18:07.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.474][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.476][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:07.478][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.480][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:07.502][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:07.503][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:07.504][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:07.506][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:07.507][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:07.508][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:07.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.532][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:07.534][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:07.535][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-14 04:18:07.550][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.551][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.554][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.555][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-14 04:18:07.578][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.597][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-14 04:18:07.599][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-14 04:18:07.601][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-14 04:18:07.602][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-14 04:18:07.604][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.606][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.608][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:07.610][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.611][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:07.613][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:07.614][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:07.616][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:07.617][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:07.619][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:07.620][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.628][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.645][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:07.646][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:07.647][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-14 04:18:07.667][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.668][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-14 04:18:07.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.671][biodb::testThat]
biodb.TRACE[2025-03-14 04:18:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.717][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-14 04:18:07.718][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-14 04:18:07.719][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-14 04:18:07.722][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.726][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:07.727][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:07.729][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:07.731][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:07.732][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:07.734][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:07.735][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:07.737][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:07.738][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:07.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:07.764][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:07.766][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-14 04:18:07.793][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.795][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-14 04:18:07.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.797][biodb::testThat]
biodb.TRACE[2025-03-14 04:18:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-14 04:18:07.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-14 04:18:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:07.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-14 04:18:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:07.943][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.945][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-14 04:18:07.946][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.947][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.965][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.967][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-14 04:18:07.968][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.970][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.980][biodb::testThat]
biodb.INFO [2025-03-14 04:18:07.982][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-14 04:18:07.983][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:07.984][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:07.989][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-14 04:18:13.452][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-14 04:18:14.037][biodb::testThat]
biodb.INFO [2025-03-14 04:18:14.039][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-14 04:18:14.041][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:14.043][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:15.634][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-14 04:18:16.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:16.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.165][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:16.167][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:16.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.172][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:16.174][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:16.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.178][ef$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:16.180][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.182][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-14 04:18:16.184][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:16.186][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:16.189][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-14 04:18:16.286][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-14 04:18:16.290][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.292][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-14 04:18:16.373][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-14 04:18:16.375][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-14 04:18:16.377][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-14 04:18:16.379][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:16.381][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.383][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:16.385][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:16.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:16.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:16.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:16.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:16.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:16.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:16.450][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-14 04:18:16.452][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-14 04:18:16.474][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.476][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-14 04:18:16.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:16.478][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:16.489][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-14 04:18:16.491][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-14 04:18:16.493][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-14 04:18:16.495][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.497][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-14 04:18:16.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-14 04:18:16.502][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-14 04:18:16.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-14 04:18:16.513][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:16.515][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.517][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:16.519][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:16.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:16.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:16.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:16.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:16.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:16.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:16.536][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:16.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:16.581][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-14 04:18:16.582][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-14 04:18:16.584][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-14 04:18:16.603][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.605][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-14 04:18:16.606][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:16.608][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.639][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.641][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-14 04:18:16.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:16.644][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:16.648][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.650][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.653][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:16.655][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.657][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:16.659][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:16.661][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:16.662][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:16.664][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-14 04:18:16.683][biodb::testThat]
biodb.INFO [2025-03-14 04:18:16.685][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-14 04:18:16.686][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:16.688][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:16.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.693][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.696][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:16.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:16.699][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:16.701][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:16.703][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:16.705][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:16.706][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-14 04:18:16.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:16.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:16.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.725][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:16.727][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:16.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:16.731][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:16.733][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:16.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:16.736][ef$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:16.738][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-14 04:18:16.740][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-14 04:18:16.752][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-14 04:18:16.753][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-14 04:18:16.754][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:16.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:16.757][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:16.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:16.760][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-14 04:18:16.767][biodb::testContext]
biodb.INFO [2025-03-14 04:18:16.768][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:16.770][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-14 04:18:16.771][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:16.773][biodb::testContext]
biodb.INFO [2025-03-14 04:18:16.778][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:16.781][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:16.786][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:16.788][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-14 04:18:16.789][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.795][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-14 04:18:16.797][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.803][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-14 04:18:16.805][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.811][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-14 04:18:16.812][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-14 04:18:16.814][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-14 04:18:16.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.819][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-14 04:18:16.821][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-14 04:18:16.822][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.828][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-14 04:18:16.829][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-14 04:18:16.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.834][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-14 04:18:16.836][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-14 04:18:16.837][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-14 04:18:16.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.842][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-14 04:18:16.852][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.858][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-14 04:18:16.860][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-14 04:18:16.861][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-14 04:18:16.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.867][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:16.868][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-14 04:18:16.870][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-14 04:18:16.871][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-14 04:18:16.873][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-14 04:18:16.875][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-14 04:18:16.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.880][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-14 04:18:16.882][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-14 04:18:16.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.887][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-14 04:18:16.889][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-14 04:18:16.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.894][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-14 04:18:16.896][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-14 04:18:16.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.902][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-14 04:18:16.903][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-14 04:18:16.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.909][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-14 04:18:16.911][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-14 04:18:16.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.916][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:16.918][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-14 04:18:16.923][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-14 04:18:16.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.929][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-14 04:18:16.930][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-14 04:18:16.932][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-14 04:18:16.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:16.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:16.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:16.938][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-14 04:18:16.941][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:16.943][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-14 04:18:16.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:16.947][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.949][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:16.950][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:16.952][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:16.953][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:16.955][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:16.956][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.958][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-14 04:18:16.959][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:16.961][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:16.963][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.964][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:16.964][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:16.964][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:16.964][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:16.964][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:16.966][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:16.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:16.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:16.970][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:16.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:16.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:16.974][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:16.976][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:16.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:16.979][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:16.980][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:16.982][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:16.983][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-14 04:18:16.986][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:16.988][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:16.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.991][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:16.992][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:16.994][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:16.995][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:16.997][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:16.998][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:17.000][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:17.001][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.003][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-14 04:18:17.004][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:17.006][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.008][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.009][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:17.009][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:17.009][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:17.009][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:17.009][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:17.011][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:17.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.024][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:17.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.027][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.029][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.031][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.032][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:17.034][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:17.035][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.037][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.039][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-14 04:18:17.042][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.044][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-14 04:18:17.045][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.047][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:17.049][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.050][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.054][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.055][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:17.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:17.058][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.059][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-14 04:18:17.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:17.062][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.063][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.064][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.066][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:17.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:17.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.074][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.075][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.077][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:17.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:17.079][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.081][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.082][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-14 04:18:17.085][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.086][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:17.088][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:17.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.093][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.096][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:17.098][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:17.099][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.100][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-14 04:18:17.102][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:17.103][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.106][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.107][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:17.108][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.109][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.111][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:17.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.115][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.117][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.118][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:17.120][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:17.121][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.122][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.124][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:17.125][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.240][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-14 04:18:17.242][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-14 04:18:17.244][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-14 04:18:17.246][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-14 04:18:17.248][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-14 04:18:17.250][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:17.252][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:17.254][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:17.255][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-14 04:18:17.258][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:17.259][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:17.261][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-14 04:18:17.263][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:17.265][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:17.267][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-14 04:18:17.269][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:17.271][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-14 04:18:17.273][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-14 04:18:17.275][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-14 04:18:17.277][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-14 04:18:17.279][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-14 04:18:17.281][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-14 04:18:17.283][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-14 04:18:17.285][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-14 04:18:17.286][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-14 04:18:17.288][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-14 04:18:17.290][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-14 04:18:17.292][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-14 04:18:17.294][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-14 04:18:17.296][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-14 04:18:17.298][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-14 04:18:17.300][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-14 04:18:17.302][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-14 04:18:17.304][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-14 04:18:17.306][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-14 04:18:17.307][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-14 04:18:17.320][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-14 04:18:17.326][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-14 04:18:17.329][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-14 04:18:17.332][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-14 04:18:17.335][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-14 04:18:17.391][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-14 04:18:17.398][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-14 04:18:17.403][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-14 04:18:17.406][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-14 04:18:17.409][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-14 04:18:17.412][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-14 04:18:17.414][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-14 04:18:17.418][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-14 04:18:17.420][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-14 04:18:17.423][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-14 04:18:17.426][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-14 04:18:17.428][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-14 04:18:17.431][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-14 04:18:17.434][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-14 04:18:17.437][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-14 04:18:17.440][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-14 04:18:17.443][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-14 04:18:17.447][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-14 04:18:17.450][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-14 04:18:17.453][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-14 04:18:17.456][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-14 04:18:17.459][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-14 04:18:17.461][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-14 04:18:17.464][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-14 04:18:17.467][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-14 04:18:17.470][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-14 04:18:17.473][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-14 04:18:17.476][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-14 04:18:17.478][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-14 04:18:17.481][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-14 04:18:17.484][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-14 04:18:17.487][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-14 04:18:17.490][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-14 04:18:17.492][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-14 04:18:17.495][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-14 04:18:17.497][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-14 04:18:17.501][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-14 04:18:17.503][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-14 04:18:17.506][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-14 04:18:17.509][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-14 04:18:17.512][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-14 04:18:17.514][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-14 04:18:17.517][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-14 04:18:17.520][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:17.522][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:17.524][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.528][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:17.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:17.697][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:17.699][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:17.703][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.704][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.706][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.707][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:17.709][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.710][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-14 04:18:17.712][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.713][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.714][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-14 04:18:17.716][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:17.717][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.718][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-14 04:18:17.720][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-14 04:18:17.721][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-14 04:18:17.723][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:17.724][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:17.724][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-14 04:18:17.724][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-14 04:18:17.726][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-14 04:18:17.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.728][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.730][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:17.731][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:17.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:17.734][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:17.735][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:17.735][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-14 04:18:17.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:17.738][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:17.747][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:17.749][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:17.751][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-14 04:18:17.753][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:17.755][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:17.757][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:17.759][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:17.764][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:17.766][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-14 04:18:17.767][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:17.770][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:17.771][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:17.773][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:17.774][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-14 04:18:17.776][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-14 04:18:17.777][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:17.777][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-14 04:18:17.778][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:17.780][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:17.781][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-14 04:18:17.782][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-14 04:18:17.783][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:17.786][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:17.787][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:17.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:17.790][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:17.792][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:17.793][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-14 04:18:17.796][biodb::testThat]
biodb.INFO [2025-03-14 04:18:17.797][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-14 04:18:17.798][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:17.799][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:17.805][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:17.807][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:17.809][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:17.811][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:17.813][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:17.814][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:17.816][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:17.817][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:17.818][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:17.823][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-14 04:18:17.830][biodb::testThat]
biodb.INFO [2025-03-14 04:18:17.832][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-14 04:18:17.833][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:17.834][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:17.837][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-14 04:18:17.838][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-14 04:18:17.841][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:17.843][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-14 04:18:17.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-14 04:18:17.847][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-14 04:18:17.849][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-14 04:18:17.851][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:17.853][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:17.854][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:17.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:17.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:17.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:17.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:17.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:17.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:17.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:17.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:17.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:17.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:17.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.886][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:17.887][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:17.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:17.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.897][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:17.899][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:17.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.918][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:17.919][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:17.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:17.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:17.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.939][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:17.941][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:17.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:17.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:17.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:17.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:17.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:17.975][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.985][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:17.986][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:17.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:17.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:17.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:17.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:18.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:18.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.041][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.061][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:18.062][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:18.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:18.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:18.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:18.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.076][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.083][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:18.084][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:18.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:18.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:18.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.378][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:18.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:18.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:18.515][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-14 04:18:18.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:18.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:18.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-14 04:18:18.540][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-14 04:18:18.541][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-14 04:18:18.543][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-14 04:18:18.544][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-14 04:18:18.545][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:18.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:18.547][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.550][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-14 04:18:18.556][biodb::testContext]
biodb.INFO [2025-03-14 04:18:18.558][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:18.559][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-14 04:18:18.560][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-14 04:18:18.562][biodb::testContext]
biodb.INFO [2025-03-14 04:18:18.567][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:18.569][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:18.574][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:18.575][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-14 04:18:18.577][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.582][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-14 04:18:18.583][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.588][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-14 04:18:18.589][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.594][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-14 04:18:18.595][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-14 04:18:18.597][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-14 04:18:18.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.601][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-14 04:18:18.603][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-14 04:18:18.604][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.609][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-14 04:18:18.610][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-14 04:18:18.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.615][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-14 04:18:18.616][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-14 04:18:18.618][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-14 04:18:18.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.622][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-14 04:18:18.624][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.629][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-14 04:18:18.631][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-14 04:18:18.632][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-14 04:18:18.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.646][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:18.647][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-14 04:18:18.648][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-14 04:18:18.649][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-14 04:18:18.651][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-14 04:18:18.652][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-14 04:18:18.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.657][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-14 04:18:18.658][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-14 04:18:18.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.663][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-14 04:18:18.664][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-14 04:18:18.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.669][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-14 04:18:18.670][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-14 04:18:18.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.675][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-14 04:18:18.676][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-14 04:18:18.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.681][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-14 04:18:18.683][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-14 04:18:18.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.687][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-14 04:18:18.689][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-14 04:18:18.694][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-14 04:18:18.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.699][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-14 04:18:18.700][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-14 04:18:18.701][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-14 04:18:18.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.707][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-14 04:18:18.709][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.710][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-14 04:18:18.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:18.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.716][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.717][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.718][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.720][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:18.721][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:18.722][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.724][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-14 04:18:18.725][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:18.726][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.728][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.729][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:18.729][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:18.729][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:18.729][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:18.729][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:18.730][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:18.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.734][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:18.735][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.738][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.739][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:18.742][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:18.743][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.744][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.746][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-14 04:18:18.748][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.750][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:18.751][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.752][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:18.754][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.755][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.756][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.758][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.759][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:18.760][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:18.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.763][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-14 04:18:18.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:18.765][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.768][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:18.768][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-14 04:18:18.768][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-14 04:18:18.768][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-14 04:18:18.768][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-14 04:18:18.769][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:18.771][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.772][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.773][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:18.774][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.777][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.786][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.788][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:18.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:18.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.792][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.793][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-14 04:18:18.796][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.797][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-14 04:18:18.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:18.801][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.802][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.803][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.804][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.806][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-14 04:18:18.807][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:18.808][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.809][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-14 04:18:18.811][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:18.812][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.813][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.815][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.816][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:18.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.818][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.819][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:18.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.823][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.825][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.826][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:18.827][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:18.828][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.830][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.831][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-14 04:18:18.833][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.835][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-14 04:18:18.836][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.837][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:18.839][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.840][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.841][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.843][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.844][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-14 04:18:18.845][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:18.846][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.848][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-14 04:18:18.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:18.850][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.852][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:18.853][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.854][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-14 04:18:18.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:18.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:18.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:18.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:18.863][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.864][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:18.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:18.866][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:18.868][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:18.870][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:18.871][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:18.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:18.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:18.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:18.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:18.982][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-14 04:18:18.984][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-14 04:18:18.985][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-14 04:18:18.987][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-14 04:18:18.989][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-14 04:18:18.991][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:18.993][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:18.995][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:18.997][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-14 04:18:18.999][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:19.001][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:19.003][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-14 04:18:19.005][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-14 04:18:19.006][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-14 04:18:19.008][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-14 04:18:19.010][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:19.012][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-14 04:18:19.014][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-14 04:18:19.016][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-14 04:18:19.018][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-14 04:18:19.020][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-14 04:18:19.022][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-14 04:18:19.024][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-14 04:18:19.026][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-14 04:18:19.028][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-14 04:18:19.029][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-14 04:18:19.031][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-14 04:18:19.033][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-14 04:18:19.035][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-14 04:18:19.037][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-14 04:18:19.039][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-14 04:18:19.041][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-14 04:18:19.043][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-14 04:18:19.044][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-14 04:18:19.046][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-14 04:18:19.048][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-14 04:18:19.050][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-14 04:18:19.052][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-14 04:18:19.062][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-14 04:18:19.065][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-14 04:18:19.067][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-14 04:18:19.069][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-14 04:18:19.071][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-14 04:18:19.073][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-14 04:18:19.075][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-14 04:18:19.077][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-14 04:18:19.078][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-14 04:18:19.081][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-14 04:18:19.083][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-14 04:18:19.085][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-14 04:18:19.087][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-14 04:18:19.089][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-14 04:18:19.091][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-14 04:18:19.093][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-14 04:18:19.095][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-14 04:18:19.097][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-14 04:18:19.099][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-14 04:18:19.101][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-14 04:18:19.103][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-14 04:18:19.105][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-14 04:18:19.107][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-14 04:18:19.109][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-14 04:18:19.110][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-14 04:18:19.112][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-14 04:18:19.114][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-14 04:18:19.116][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-14 04:18:19.118][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-14 04:18:19.120][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-14 04:18:19.122][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-14 04:18:19.124][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-14 04:18:19.126][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-14 04:18:19.128][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-14 04:18:19.130][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-14 04:18:19.132][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-14 04:18:19.134][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-14 04:18:19.135][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-14 04:18:19.137][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-14 04:18:19.139][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-14 04:18:19.151][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-14 04:18:19.157][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-14 04:18:19.160][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-14 04:18:19.163][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-14 04:18:19.166][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-14 04:18:19.170][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-14 04:18:19.175][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-14 04:18:19.178][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-14 04:18:19.179][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.183][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-14 04:18:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:19.417][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-14 04:18:19.418][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:19.421][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:19.423][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-14 04:18:19.424][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:19.425][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-14 04:18:19.427][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:19.428][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-14 04:18:19.429][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:19.431][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-14 04:18:19.432][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-14 04:18:19.433][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-14 04:18:19.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:19.436][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-14 04:18:19.438][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-14 04:18:19.439][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-14 04:18:19.448][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-14 04:18:19.450][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-14 04:18:19.450][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-14 04:18:19.450][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-14 04:18:19.451][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-14 04:18:19.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:19.453][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:19.455][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-14 04:18:19.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-14 04:18:19.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-14 04:18:19.458][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-14 04:18:19.459][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:19.459][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-14 04:18:19.461][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:19.462][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:19.463][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-14 04:18:19.464][self$setPropertyValue]
biodb.DEBUG[2025-03-14 04:18:19.466][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-14 04:18:19.468][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-14 04:18:19.470][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-14 04:18:19.472][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-14 04:18:19.474][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-14 04:18:19.479][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:19.480][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-14 04:18:19.482][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:19.484][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:19.485][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:19.487][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:19.488][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-14 04:18:19.490][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-14 04:18:19.491][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-14 04:18:19.491][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-14 04:18:19.492][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-14 04:18:19.493][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-14 04:18:19.495][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-14 04:18:19.496][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-14 04:18:19.497][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-14 04:18:19.499][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:19.501][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:19.502][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:19.504][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4.3/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-14 04:18:19.506][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-14 04:18:19.507][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-14 04:18:19.509][biodb::testThat]
biodb.INFO [2025-03-14 04:18:19.510][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-14 04:18:19.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-14 04:18:19.513][biodb::testThat]
biodb.DEBUG[2025-03-14 04:18:19.516][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-14 04:18:19.517][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-14 04:18:19.518][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-14 04:18:19.523][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:19.524][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:19.526][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:19.528][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:19.529][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:19.531][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:19.532][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:19.534][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:19.535][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:19.537][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:19.538][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-14 04:18:19.541][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-14 04:18:19.542][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-14 04:18:19.544][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:19.546][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-14 04:18:19.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-14 04:18:19.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-14 04:18:19.553][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-14 04:18:19.554][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:19.556][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:19.558][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:19.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:19.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:19.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:19.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:19.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:19.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:19.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:19.578][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:19.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:19.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.597][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:19.599][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:19.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.601][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.603][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.608][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.610][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.619][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.620][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.641][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.642][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:19.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:19.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:19.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:19.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.675][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.676][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.686][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.687][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:19.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:19.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:19.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:19.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:19.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:19.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:19.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:19.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:19.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:19.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:19.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.775][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:19.777][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:19.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:19.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:19.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:19.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.801][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:19.802][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:19.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:19.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:19.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.832][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.838][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.863][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:19.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:19.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:20.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:20.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.277][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:20.326][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-14 04:18:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:20.356][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:20.358][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:20.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:20.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:20.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:20.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:20.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:20.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:20.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:20.378][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-14 04:18:20.379][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-14 04:18:20.382][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:20.385][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-14 04:18:20.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-14 04:18:20.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-14 04:18:20.393][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-14 04:18:20.395][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-14 04:18:20.397][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-14 04:18:20.399][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-14 04:18:20.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:20.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:20.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:20.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:20.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:20.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:20.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:20.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.438][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.440][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:20.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.453][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.455][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.480][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.482][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.489][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.510][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.512][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.552][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.554][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.566][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.568][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.634][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.656][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.658][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:20.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.685][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:20.686][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-14 04:18:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.733][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-14 04:18:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-14 04:18:20.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-14 04:18:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-14 04:18:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-14 04:18:20.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-14 04:18:20.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-14 04:18:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-14 04:18:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-14 04:18:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-14 04:18:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-14 04:18:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.942][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-14 04:18:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-14 04:18:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:20.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-14 04:18:21.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-14 04:18:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:21.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-14 04:18:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-14 04:18:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.087][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-14 04:18:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-14 04:18:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:21.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:21.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-14 04:18:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-14 04:18:21.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.141][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-14 04:18:21.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-14 04:18:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-14 04:18:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.189][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-14 04:18:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.214][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:21.215][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:21.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:21.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:21.238][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-14 04:18:21.239][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-14 04:18:21.241][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-14 04:18:21.244][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.246][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.248][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:21.250][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.252][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:21.254][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:21.255][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:21.257][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:21.258][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:21.259][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:21.261][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.303][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:21.305][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:21.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:21.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.369][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-14 04:18:21.371][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:21.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:21.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-14 04:18:21.392][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-14 04:18:21.393][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-14 04:18:21.395][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-14 04:18:21.397][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.399][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.401][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-14 04:18:21.403][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-14 04:18:21.404][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-14 04:18:21.406][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-14 04:18:21.407][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-14 04:18:21.409][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-14 04:18:21.410][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-14 04:18:21.412][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-14 04:18:21.413][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-14 04:18:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.454][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-14 04:18:21.455][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-14 04:18:21.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:21.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-14 04:18:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.518][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.528][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-14 04:18:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-14 04:18:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-14 04:18:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-14 04:18:21.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-14 04:18:21.553][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-14 04:18:21.555][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-14 04:18:21.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-14 04:18:21.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-14 04:18:21.605][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-14 04:18:21.608][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-14 04:18:21.611][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-14 04:18:21.613][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-14 04:18:21.615][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-14 04:18:21.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-14 04:18:21.619][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-14 04:18:21.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-14 04:18:21.623][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-14 04:18:21.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 12.371   0.780  21.021

Example timings