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This page was generated on 2025-01-30 13:13 -0500 (Thu, 30 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4703
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4477
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4430
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4420
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 64/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ANCOMBC 2.9.1  (landing page)
Huang Lin
Snapshot Date: 2025-01-29 13:40 -0500 (Wed, 29 Jan 2025)
git_url: https://git.bioconductor.org/packages/ANCOMBC
git_branch: devel
git_last_commit: e178b0d
git_last_commit_date: 2025-01-07 20:56:39 -0500 (Tue, 07 Jan 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for ANCOMBC on kunpeng2

To the developers/maintainers of the ANCOMBC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ANCOMBC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: ANCOMBC
Version: 2.9.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC
StartedAt: 2025-01-29 20:48:58 -0000 (Wed, 29 Jan 2025)
EndedAt: 2025-01-29 21:01:58 -0000 (Wed, 29 Jan 2025)
EllapsedTime: 780.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC
###
##############################################################################
##############################################################################


* checking for file ‘ANCOMBC/DESCRIPTION’ ... OK
* preparing ‘ANCOMBC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: ANCOMBC
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘ANCOM.Rmd’ using rmarkdown
--- finished re-building ‘ANCOM.Rmd’

--- re-building ‘ANCOMBC.Rmd’ using rmarkdown
--- finished re-building ‘ANCOMBC.Rmd’

--- re-building ‘ANCOMBC2.Rmd’ using rmarkdown
--- finished re-building ‘ANCOMBC2.Rmd’

--- re-building ‘SECOM.Rmd’ using rmarkdown
--- finished re-building ‘SECOM.Rmd’

--- re-building ‘data_sanity_check.Rmd’ using rmarkdown
Warning: program compiled against libxml 212 using older 211

Quitting from lines 115-123 [unnamed-chunk-9] (data_sanity_check.Rmd)
Error: processing vignette 'data_sanity_check.Rmd' failed with diagnostics:
'block' is not a recognized matrix representation
--- failed re-building ‘data_sanity_check.Rmd’

SUMMARY: processing the following file failed:
  ‘data_sanity_check.Rmd’

Error: Vignette re-building failed.
Execution halted